Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Forward (+)

850738 .. 858373

Gene Structure 7636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGGGCGTATCGCTCAAGTGCGGCGATTGCGGGAGTCTGCTGAGGTCGGTGGAGGAAGCCCAAGAGCACGCCGAGCTCACCTCCCACTCGAACTTCTCTGAGTCAACCGAAGCTGTTCTCAACCTCGTCTGCTCCTCTTGCGGCAAACCATGCCGATCCAAAACCGAAAGTGATTTGCACACCAAAAGAACTGGGCACACCGAGTTTGTTGATAAGACTGTGGATGCAGCTAAACCGATAAGTTTGGAGGCTCCAAAGGCAAGTCCTTCAGGGTCCGATGAGGCTGTTGGTGCAAGTAGCCATGCGGCAGAAGAAATGGTCGTTCCAGAGGTTGACAAAAAGCTGCTTGAGGAACTTGAAGGAATGGGCTTTTCAACAGCGCGGGCAACCCGTGCACTTCACTATTCTGGTAATGCGAGCTTGGAGGCTGCTGTCAATTGGGTAGTTGAACATGAGACTGATCCGGACATAGATGAAATGCCTTTGGTACCAATCAACAGCAAAGTTGAGGCTCCAAAACCTTCTCTCACGCCAGAACAATTGAAAGCCAAGCAACAAGAGCTTAGGGAGAAAGCTCGCAAGAAGAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAGAAAGAAAAGGAGAGGATTCGAGTGGGCAAGGAACTCCTAGAAGCGAAGAGAATAGAAGAAGACAATGAAAGAAAAAGGATTATTGCTTTGCGAAAAGCAGAGAAAGACGAAGAGAAAAGAGCTAGGGAAAAGATTCGTCAAAAGTTGGAGGAAGATAAGGCAGAGAGGAGGAGGAAACTTGGGTTGCCAGTAGAGGATCCTTCAACTGCAAAACCTGCTGCACCTGTTGTGGAAGAGAGAAAGAGCTTTGTGCCTATAAGGCCTGCCACAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCTCTCAAGCAGAATCACAAGGAGGACGATGCAAAAGTGAAGAGAGCATTCCAGACTCTTTTAACTTTTGTAGGGAATGTTGCCAAAAATCCTAATGAGGAGAAATTTAGAAAGATACGACTCACTAACCCATCTTTCCAGGAAAGGGTTGGCTCACTAAAAGGCGGTGTCGAGTTTCTTGAGTTGTGCGAGTTTGAGAGAATGGAAGGGGGCGAGTTCTTGTTCCTTCCGAGGGACAAGGTTGACATGGCAGTGCTGAACTCAGCTGGGTCTGAGCTCGACTCTGCAATCAAGAATCCATTTTTCGGTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

413

Amino Acids

46.24

Weight (kDa)

6.2

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	1 cut(s)	385
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	7 cut(s)	5, 24, 33, 144, 308, 385, 1086
AclWI	GGATC	4 cut(s)	153, 458, 812, 825
AcsI	RAATTY	1 cut(s)	1025
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	3 cut(s)	1066, 1153, 1226
AgsI	TTSAA	5 cut(s)	362, 378, 452, 547, 825
AjnI	CCWGG	1 cut(s)	1059
Alw21I	GWGCWC	4 cut(s)	72, 81, 400, 1200
Alw26I	GTCTC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	4 cut(s)	153, 458, 812, 825
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	1 cut(s)	881
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	230, 346, 431, 839
ApoI	RAATTY	1 cut(s)	1025
Asp700I	GAANNNNTTC	2 cut(s)	117, 753
Asp718I	GGTACC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	2 cut(s)	201, 400
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	81, 1200
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	4 cut(s)	72, 81, 400, 1200
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	242, 333, 418, 826
BccI	CCATC	1 cut(s)	1060
BciT130I	CCWGG	1 cut(s)	1061
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	659, 744
BfuAI	ACCTGC	1 cut(s)	844
BglI	GCCNNNNNGGC	1 cut(s)	880
BisI	GCNGC	7 cut(s)	25, 145, 231, 309, 347, 432, 840
BlsI	GCNGC	7 cut(s)	26, 146, 232, 310, 348, 433, 841
Bme1390I	CCNGG	1 cut(s)	1061
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	5 cut(s)	255, 277, 492, 516, 819
BmrFI	CCNGG	1 cut(s)	1061
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	217, 940
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	687
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 1187, 1219
Bpu10I	CCTNAGC	2 cut(s)	44, 566
BpuEI	CTTGAG	3 cut(s)	371, 911, 1121
BsaJI	CCNNGG	1 cut(s)	1151
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	1066, 1153, 1226
Bse1I	ACTGG	2 cut(s)	199, 809
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	1061
BseDI	CCNNGG	1 cut(s)	1151
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	1066, 1153, 1226
BseMII	CTCAG	4 cut(s)	35, 93, 1185, 1197
BseNI	ACTGG	2 cut(s)	199, 809
BseRI	GAGGAG	4 cut(s)	127, 802, 805, 1034
BseSI	GKGCMC	2 cut(s)	201, 400
BseXI	GCAGC	4 cut(s)	242, 333, 418, 826
BseYI	CCCAGC	1 cut(s)	1187
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	883
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	4 cut(s)	72, 81, 400, 1200
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	1169
BslI	CCNNNNNNNGG	3 cut(s)	1066, 1153, 1226
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	1169
BsmI	GAATGC	1 cut(s)	968
BsnI	GGCC	1 cut(s)	883
Bsp1286I	GDGCHC	5 cut(s)	72, 81, 201, 400, 1200
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	158, 463, 817, 920
BspACI	CCGC	7 cut(s)	5, 24, 33, 144, 308, 385, 1086
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	4 cut(s)	36, 94, 1186, 1196
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	5 cut(s)	255, 277, 492, 516, 819
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	4 cut(s)	153, 458, 812, 825
BspT107I	GGYRCC	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	199, 809
BssECI	CCNNGG	1 cut(s)	1151
BssMI	GATC	4 cut(s)	158, 463, 817, 920
Bst2UI	CCWGG	1 cut(s)	1061
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	6 cut(s)	594, 599, 662, 726, 849, 956
BstAPI	GCANNNNNTGC	3 cut(s)	153, 395, 836
BstC8I	GCNNGC	6 cut(s)	7, 72, 387, 421, 580, 885
BstDEI	CTNAG	5 cut(s)	44, 102, 566, 1183, 1194
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	4 cut(s)	161, 466, 820, 923
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	158, 463, 817, 920
BstNI	CCWGG	1 cut(s)	1061
BstSCI	CCNGG	1 cut(s)	1059
BstSLI	GKGCMC	2 cut(s)	201, 400
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	242, 333, 418, 826
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	1 cut(s)	883
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	1179
BtsIMutI	CAGTG	1 cut(s)	1179
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	6 cut(s)	7, 72, 387, 421, 580, 885
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	4 cut(s)	153, 305, 455, 1168
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	5 cut(s)	44, 102, 566, 1183, 1194
DpnI	GATC	4 cut(s)	160, 465, 819, 922
DpnII	GATC	4 cut(s)	158, 463, 817, 920
Eam1104I	CTCTTC	6 cut(s)	594, 599, 662, 726, 849, 956
EarI	CTCTTC	6 cut(s)	594, 599, 662, 726, 849, 956
Ecl136II	GAGCTC	2 cut(s)	79, 1198
Eco147I	AGGCCT	1 cut(s)	883
Eco24I	GRGCYC	2 cut(s)	81, 1200
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	79, 1198
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	2 cut(s)	79, 1198
EcoRII	CCWGG	1 cut(s)	1059
EcoT38I	GRGCYC	2 cut(s)	81, 1200
FaeI	CATG	4 cut(s)	156, 308, 458, 1171
FaiI	YATR	6 cut(s)	154, 306, 456, 473, 878, 1169
FaqI	GGGAC	1 cut(s)	1169
FatI	CATG	4 cut(s)	152, 304, 454, 1167
FauI	CCCGC	2 cut(s)	26, 378
Fnu4HI	GCNGC	7 cut(s)	25, 145, 231, 309, 347, 432, 840
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	81, 1200
Fsp4HI	GCNGC	7 cut(s)	25, 145, 231, 309, 347, 432, 840
FspBI	CTAG	2 cut(s)	659, 744
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	7 cut(s)	25, 145, 231, 309, 347, 432, 840
GsaI	CCCAGC	1 cut(s)	1191
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	156, 308, 458, 1171
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	3 cut(s)	108, 337, 1165
HindII	GTYRAC	3 cut(s)	108, 337, 1165
HinfI	GANTC	9 cut(s)	37, 104, 637, 754, 934, 976, 1041, 1202, 1216
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	4 cut(s)	108, 337, 398, 1165
Hpy188I	TCNGA	4 cut(s)	103, 280, 1152, 1195
Hpy188III	TCNNGA	5 cut(s)	329, 467, 973, 1100, 1213
Hpy8I	GTNNAC	4 cut(s)	108, 337, 398, 1165
HpyAV	CCTTC	6 cut(s)	279, 356, 534, 831, 1121, 1157
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	8 cut(s)	181, 230, 296, 398, 830, 842, 953, 1208
HpyF3I	CTNAG	5 cut(s)	44, 102, 566, 1183, 1194
Hsp92II	CATG	4 cut(s)	156, 308, 458, 1171
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	158, 463, 817, 920
LmnI	GCTCC	3 cut(s)	140, 259, 520
Lsp1109I	GCAGC	4 cut(s)	242, 333, 418, 826
LweI	GCATC	2 cut(s)	217, 940
MaeI	CTAG	2 cut(s)	659, 744
MalI	GATC	4 cut(s)	160, 465, 819, 922
MboI	GATC	4 cut(s)	158, 463, 817, 920
MfeI	CAATTG	2 cut(s)	439, 542
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	5 cut(s)	72, 81, 201, 400, 1200
MluCI	AATT	3 cut(s)	439, 542, 1025
MlyI	GAGTC	5 cut(s)	46, 113, 970, 1035, 1196
MmeI	TCCRAC	1 cut(s)	747
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	117, 753
MseI	TTAA	2 cut(s)	983, 1237
MslI	CAYNNNNRTG	1 cut(s)	1172
MspA1I	CMGCKG	1 cut(s)	1187
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	1061
MunI	CAATTG	2 cut(s)	439, 542
Mva1269I	GAATGC	1 cut(s)	968
MvaI	CCWGG	1 cut(s)	1061
MvnI	CGCG	1 cut(s)	385
NdeII	GATC	4 cut(s)	158, 463, 817, 920
NlaIII	CATG	4 cut(s)	156, 308, 458, 1171
NlaIV	GGNNCC	5 cut(s)	255, 277, 492, 516, 819
NmeAIII	GCCGAG	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	883
PctI	GAATGC	1 cut(s)	968
PdmI	GAANNNNTTC	2 cut(s)	117, 753
PfeI	GAWTC	4 cut(s)	637, 754, 934, 1216
PfoI	TCCNGGA	1 cut(s)	1059
PkrI	GCNGC	7 cut(s)	26, 146, 232, 310, 348, 433, 841
PleI	GAGTC	5 cut(s)	45, 112, 970, 1035, 1196
PpsI	GAGTC	5 cut(s)	45, 112, 970, 1035, 1196
Psp124BI	GAGCTC	2 cut(s)	81, 1200
Psp6I	CCWGG	1 cut(s)	1059
PspFI	CCCAGC	1 cut(s)	1187
PspGI	CCWGG	1 cut(s)	1059
PspN4I	GGNNCC	5 cut(s)	255, 277, 492, 516, 819
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	1187
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	1172
SacI	GAGCTC	2 cut(s)	81, 1200
SaqAI	TTAA	2 cut(s)	983, 1237
SatI	GCNGC	7 cut(s)	25, 145, 231, 309, 347, 432, 840
Sau3AI	GATC	4 cut(s)	158, 463, 817, 920
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	5 cut(s)	46, 113, 970, 1035, 1196
ScrFI	CCNGG	1 cut(s)	1061
SduI	GDGCHC	5 cut(s)	72, 81, 201, 400, 1200
SfaNI	GCATC	2 cut(s)	217, 940
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	1172
SmlI	CTYRAG	4 cut(s)	17, 350, 926, 1100
SmoI	CTYRAG	4 cut(s)	17, 350, 926, 1100
Sse9I	AATT	3 cut(s)	439, 542, 1025
SseBI	AGGCCT	1 cut(s)	883
SsiI	CCGC	7 cut(s)	5, 24, 33, 144, 308, 385, 1086
SspMI	CTAG	2 cut(s)	659, 744
SstI	GAGCTC	2 cut(s)	81, 1200
StuI	AGGCCT	1 cut(s)	883
StyD4I	CCNGG	1 cut(s)	1059
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	92, 640, 1092, 1200
TasI	AATT	3 cut(s)	439, 542, 1025
TauI	GCSGC	3 cut(s)	27, 147, 311
TfiI	GAWTC	4 cut(s)	637, 754, 934, 1216
Tru1I	TTAA	2 cut(s)	983, 1237
Tru9I	TTAA	2 cut(s)	983, 1237
TscAI	CASTG	1 cut(s)	1179
TseI	GCWGC	4 cut(s)	230, 346, 431, 839
TspDTI	ATGAA	2 cut(s)	492, 702
TspRI	CASTG	1 cut(s)	1179
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1067
XmnI	GAANNNNTTC	2 cut(s)	117, 753
XspI	CTAG	2 cut(s)	659, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.