RLG00000008127

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25967262 .. 25976096
8835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008127

Sequence Viewer

Length: 1383 bp
ATGGCGGGCGTGTCTCTCAAGTGCGGGGACTGTGGGGCTCTCCTCAGGTCTGTTGAGGAAGCCCAAGAGCATGCCGAGCTCACCTCCCACTCCAACTTCGCTGAGTCCACCGAGGCTGTTCTCAACCTCGTCTGCTCTACTTGCGGCAAACCATGCCGATCCAAAACCGAAAGTGACCTGCACACCAAAAGAACTGGGCACACTGAGTTTGTTGATAAGACTGCGGATGCAGCGAAACCGATAAGTTTGGAGGTTCCAAAGGTGACTGCTTCAGAGTCGGAAGATGTTGCTGCAACTAGCCAGACCCAAGAGATGGTAGTTCCAGAGGTCGACAAAAATCTGCTTCAGGAACTTGAAGGAATGGGATTTTCAAAAGAGCGGGCAACCCGTGCACTTCACTATTCCGGTAATGCTAGCCTGGAGGCTGCTGTCAATTGGGTAGTTGAACATGAGAATGATATGGACATAGATGAGATGCCTTTGGTACCAGTCAACTCCAAAGTGGAGGCTCCAAAACCTTCTCTCACACCAGAGCAATTGAAAGCCAAGCAACATGAGCTTAGGGAGAAGGCCCGGAAGAAAAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAGAGAGAAAAGGAGAGGATTCGAGTGGGCAAGGAACTCCTAGAAGCGAAGAGGATAGAAGAAGAAAATGAAAGAAAACGGATTTTGGCCTTACGAAAAGCTGAGAAAGAGGAAGAGAAAAGAGCCAGGGAGAGGATTCGTCAAAAACTGGAAGAAGATAAGGCGGAAAGGAGGAGGAAACTTGGTTTGCCACCAGAAGATCCTTCAACTACAAAACCTTCTGCACCTGTTGTAGAAGAGAAAAAGATGTCATTGCCAGTTAGGCCTGCTACTAAAGCAGAGCAAATGAGAGAGTGTTTGCGATCTCTTAAGCAGAATCACAAGGAGGATGATGCCAAAGTAAAGAGAGCATTCCAGACTCTTTTAACTTTTGTAGGTAATATTGTGAAAAATCCTGATGAGGAGAAATTCAGAAAAATAAGACTCACTAACCAATCTTTCCAGGAAAGGGTTGGTTCATTGAGGGGAGGCACTCAGTTTCTTGAGTTGTGTGGATTTGAGAAAATGGAAGGCGGTGAGTTCTTGTTTCTTGCTAGAGACAAGGTTGACATGGCAGTACTCCATTCAGCTGGGTCTGAGCTAGACTCTGCAATAAAGAATCCCTTCTTTGGTGTTTTTGGCCTTGTGGTCTTCTCTGGCTGCGAGGTGTGTGCTGACGGCGGGCGGATGGCGTCTGTATTGCTGCGGCGTGGGTCTGGCGTGGAGCTGTTGTTGGGGTCTGTCTTTGGGCCAGGCTGTAGTTGGGTCTGGGGGCCGGGGGAGTTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.47

Weight (kDa)

6.26

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 3.5e-10 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7 PF22562 111 - 158 7.3e-18 UBA-like domain
UBA PF00627 115 - 146 4.8e-08 UBA/TS-N domain
PUB PF09409 317 - 387 1e-23 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 330
AclWI GGATC 2 cut(s) 153, 806
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 2 cut(s) 255, 329
AcyI GRCGYC 1 cut(s) 1283
AfaI GTAC 2 cut(s) 486, 1170
AfiI CCNNNNNNNGG 4 cut(s) 313, 744, 1060, 1220
AflII CTTAAG 1 cut(s) 920
AgsI TTSAA 5 cut(s) 356, 372, 446, 541, 819
AjnI CCWGG 4 cut(s) 417, 737, 1053, 1342
AluBI AGCT 6 cut(s) 79, 559, 713, 1181, 1192, 1318
AluI AGCT 6 cut(s) 79, 559, 713, 1181, 1192, 1318
Alw21I GWGCWC 2 cut(s) 81, 394
Alw26I GTCTC 2 cut(s) 18, 1143
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 2 cut(s) 153, 806
AoxI GGCC 6 cut(s) 570, 699, 875, 1231, 1340, 1364
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 5 cut(s) 230, 290, 425, 1251, 1294
ApoI RAATTY 1 cut(s) 1019
Asp700I GAANNNNTTC 1 cut(s) 1214
Asp718I GGTACC 1 cut(s) 484
AspS9I GGNCC 3 cut(s) 571, 1340, 1364
AsuC2I CCSGG 2 cut(s) 574, 1368
AsuHPI GGTGA 3 cut(s) 73, 274, 1139
AsuNHI GCTAGC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 201, 394
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 40, 81
BbsI GAAGAC 1 cut(s) 1234
Bbv12I GWGCWC 2 cut(s) 81, 394
BbvI GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BccI CCATC 2 cut(s) 307, 1273
BceAI ACGGC 1 cut(s) 1285
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 4 cut(s) 419, 739, 1055, 1344
BcnI CCSGG 2 cut(s) 574, 1368
BcoDI GTCTC 2 cut(s) 18, 1143
BfaI CTAG 5 cut(s) 297, 414, 653, 1146, 1193
BfmI CTRYAG 1 cut(s) 1348
BfrI CTTAAG 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 874
BisI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
BlsI GCNGC 7 cut(s) 146, 232, 292, 427, 1253, 1296, 1299
BmcAI AGTACT 1 cut(s) 1170
Bme1390I CCNGG 6 cut(s) 419, 574, 739, 1055, 1344, 1368
BmgT120I GGNCC 3 cut(s) 571, 1340, 1364
BmiI GGNNCC 4 cut(s) 255, 486, 510, 1365
BmrFI CCNGG 6 cut(s) 419, 574, 739, 1055, 1344, 1368
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 3 cut(s) 217, 465, 934
BmtI GCTAGC 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 1234
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 1181, 1213
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 1115
BpuMI CCSGG 2 cut(s) 574, 1368
BsaHI GRCGYC 1 cut(s) 1283
BsaJI CCNNGG 3 cut(s) 111, 738, 1367
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 3 cut(s) 1307, 1337, 1364
Bsc4I CCNNNNNNNGG 4 cut(s) 313, 744, 1060, 1220
Bse1I ACTGG 4 cut(s) 199, 488, 765, 869
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 4 cut(s) 419, 739, 1055, 1344
BseDI CCNNGG 3 cut(s) 111, 738, 1367
BseGI GGATG 3 cut(s) 232, 946, 1284
BseLI CCNNNNNNNGG 4 cut(s) 313, 744, 1060, 1220
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 6 cut(s) 58, 93, 195, 705, 1100, 1179
BseNI ACTGG 4 cut(s) 199, 488, 765, 869
BseRI GAGGAG 3 cut(s) 32, 799, 1028
BseSI GKGCMC 2 cut(s) 201, 394
BseXI GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BseYI CCCAGC 1 cut(s) 1181
BsgI GTGCAG 2 cut(s) 164, 819
BshFI GGCC 6 cut(s) 572, 701, 877, 1233, 1342, 1366
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 81, 394
BsiSI CCGG 3 cut(s) 405, 574, 1367
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 313, 744, 1060, 1220
BsmAI GTCTC 2 cut(s) 18, 1143
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 6 cut(s) 572, 701, 877, 1233, 1342, 1366
Bsp1286I GDGCHC 4 cut(s) 40, 81, 201, 394
Bsp143I GATC 3 cut(s) 158, 811, 914
BspANI GGCC 6 cut(s) 572, 701, 877, 1233, 1342, 1366
BspCNI CTCAG 6 cut(s) 57, 94, 196, 706, 1099, 1180
BspLI GGNNCC 4 cut(s) 255, 486, 510, 1365
BspMI ACCTGC 1 cut(s) 186
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 153, 806
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 863
BsrI ACTGG 4 cut(s) 199, 488, 765, 869
BssECI CCNNGG 3 cut(s) 111, 738, 1367
BssMI GATC 3 cut(s) 158, 811, 914
BssNI GRCGYC 1 cut(s) 1283
Bst2UI CCWGG 4 cut(s) 419, 739, 1055, 1344
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
BstACI GRCGYC 1 cut(s) 1283
BstAFI CTTAAG 1 cut(s) 920
BstAPI GCANNNNNTGC 2 cut(s) 153, 389
BstC8I GCNNGC 6 cut(s) 7, 72, 381, 415, 879, 1274
BstDEI CTNAG 7 cut(s) 44, 102, 204, 560, 714, 1086, 1188
BstF5I GGATG 3 cut(s) 232, 946, 1284
BstKTI GATC 3 cut(s) 161, 814, 917
BstMAI GTCTC 2 cut(s) 18, 1143
BstMBI GATC 3 cut(s) 158, 811, 914
BstMWI GCNNNNNNNGC 8 cut(s) 76, 141, 153, 230, 389, 556, 874, 887
BstNI CCWGG 4 cut(s) 419, 739, 1055, 1344
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 6 cut(s) 417, 572, 737, 1053, 1342, 1366
BstSFI CTRYAG 1 cut(s) 1348
BstSLI GKGCMC 2 cut(s) 201, 394
BstV1I GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BstV2I GAAGAC 1 cut(s) 1234
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 6 cut(s) 572, 701, 877, 1233, 1342, 1366
BtsCI GGATG 3 cut(s) 232, 946, 1284
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 6 cut(s) 7, 72, 381, 415, 879, 1274
Cfr13I GGNCC 3 cut(s) 571, 1340, 1364
CseI GACGC 1 cut(s) 1272
Csp6I GTAC 2 cut(s) 485, 1169
CviAII CATG 5 cut(s) 71, 153, 449, 554, 1162
CviQI GTAC 2 cut(s) 485, 1169
DdeI CTNAG 7 cut(s) 44, 102, 204, 560, 714, 1086, 1188
DpnI GATC 3 cut(s) 160, 813, 916
DpnII GATC 3 cut(s) 158, 811, 914
Eam1104I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EarI CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EciI GGCGGA 2 cut(s) 791, 1291
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 877
Eco24I GRGCYC 2 cut(s) 40, 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 255, 329
Eco81I CCTNAGG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 4 cut(s) 417, 737, 1053, 1342
EcoT38I GRGCYC 2 cut(s) 40, 81
FaeI CATG 5 cut(s) 74, 156, 452, 557, 1165
FaiI YATR 7 cut(s) 72, 154, 450, 461, 467, 555, 1163
FalI AAGNNNNNCTT 2 cut(s) 1199, 1231
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 70, 152, 448, 553, 1161
FauI CCCGC 3 cut(s) 17, 372, 1265
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
FokI GGATG 3 cut(s) 239, 953, 1291
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
FspBI CTAG 5 cut(s) 297, 414, 653, 1146, 1193
GluI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
GsaI CCCAGC 1 cut(s) 1185
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 6 cut(s) 572, 701, 877, 1233, 1342, 1366
HapII CCGG 3 cut(s) 405, 574, 1367
HgaI GACGC 1 cut(s) 1272
Hin1I GRCGYC 1 cut(s) 1283
Hin1II CATG 5 cut(s) 74, 156, 452, 557, 1165
HincII GTYRAC 3 cut(s) 331, 493, 1159
HindII GTYRAC 3 cut(s) 331, 493, 1159
HinfI GANTC 9 cut(s) 104, 275, 631, 748, 928, 970, 1035, 1196, 1210
HpaII CCGG 3 cut(s) 405, 574, 1367
HphI GGTGA 3 cut(s) 73, 274, 1139
Hpy166II GTNNAC 5 cut(s) 108, 331, 392, 493, 1159
Hpy188I TCNGA 4 cut(s) 274, 280, 1025, 1189
Hpy188III TCNNGA 5 cut(s) 323, 347, 967, 1007, 1094
Hpy8I GTNNAC 5 cut(s) 108, 331, 392, 493, 1159
HpyAV CCTTC 7 cut(s) 350, 528, 562, 825, 840, 1115, 1225
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 6 cut(s) 181, 230, 293, 392, 836, 1202
HpyF10VI GCNNNNNNNGC 8 cut(s) 76, 141, 153, 230, 389, 556, 874, 887
HpyF3I CTNAG 7 cut(s) 44, 102, 204, 560, 714, 1086, 1188
Hsp92I GRCGYC 1 cut(s) 1283
Hsp92II CATG 5 cut(s) 74, 156, 452, 557, 1165
KpnI GGTACC 1 cut(s) 488
Kzo9I GATC 3 cut(s) 158, 811, 914
LmnI GCTCC 2 cut(s) 514, 1315
Lsp1109I GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
LweI GCATC 3 cut(s) 217, 465, 934
MaeI CTAG 5 cut(s) 297, 414, 653, 1146, 1193
MaeIII GTNAC 2 cut(s) 173, 262
MalI GATC 3 cut(s) 160, 813, 916
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 158, 811, 914
MfeI CAATTG 2 cut(s) 433, 536
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 4 cut(s) 40, 81, 201, 394
MluCI AATT 3 cut(s) 433, 536, 1019
MlyI GAGTC 5 cut(s) 113, 284, 964, 1029, 1190
MmeI TCCRAC 2 cut(s) 117, 258
MroXI GAANNNNTTC 1 cut(s) 1214
MseI TTAA 2 cut(s) 921, 977
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 3 cut(s) 405, 574, 1367
MspR9I CCNGG 6 cut(s) 419, 574, 739, 1055, 1344, 1368
MunI CAATTG 2 cut(s) 433, 536
Mva1269I GAATGC 1 cut(s) 962
MvaI CCWGG 4 cut(s) 419, 739, 1055, 1344
MwoI GCNNNNNNNGC 8 cut(s) 76, 141, 153, 230, 389, 556, 874, 887
NciI CCSGG 2 cut(s) 574, 1368
NdeII GATC 3 cut(s) 158, 811, 914
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 5 cut(s) 74, 156, 452, 557, 1165
NlaIV GGNNCC 4 cut(s) 255, 486, 510, 1365
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 173, 262
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 877
PctI GAATGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 4 cut(s) 631, 748, 928, 1210
PflMI CCANNNNNTGG 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 1053
PkrI GCNGC 7 cut(s) 146, 232, 292, 427, 1253, 1296, 1299
PleI GAGTC 5 cut(s) 112, 283, 964, 1029, 1190
PpsI GAGTC 5 cut(s) 112, 283, 964, 1029, 1190
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 4 cut(s) 417, 737, 1053, 1342
PspFI CCCAGC 1 cut(s) 1181
PspGI CCWGG 4 cut(s) 417, 737, 1053, 1342
PspN4I GGNNCC 4 cut(s) 255, 486, 510, 1365
PspPI GGNCC 3 cut(s) 571, 1340, 1364
PsuI RGATCY 1 cut(s) 811
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 2 cut(s) 486, 1170
RsaNI GTAC 2 cut(s) 485, 1169
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 81
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 921, 977
SatI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
Sau3AI GATC 3 cut(s) 158, 811, 914
Sau96I GGNCC 3 cut(s) 571, 1340, 1364
ScaI AGTACT 1 cut(s) 1170
SchI GAGTC 5 cut(s) 113, 284, 964, 1029, 1190
ScrFI CCNGG 6 cut(s) 419, 574, 739, 1055, 1344, 1368
SduI GDGCHC 4 cut(s) 40, 81, 201, 394
SfaNI GCATC 3 cut(s) 217, 465, 934
SfcI CTRYAG 1 cut(s) 1348
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 17, 920, 1094
SmoI CTYRAG 3 cut(s) 17, 920, 1094
SphI GCATGC 1 cut(s) 74
Sse9I AATT 3 cut(s) 433, 536, 1019
SseBI AGGCCT 1 cut(s) 877
SspI AATATT 1 cut(s) 994
SspMI CTAG 5 cut(s) 297, 414, 653, 1146, 1193
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 6 cut(s) 417, 572, 737, 1053, 1342, 1366
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 330, 634
TasI AATT 3 cut(s) 433, 536, 1019
TatI WGTACW 1 cut(s) 1168
TauI GCSGC 2 cut(s) 147, 1300
TfiI GAWTC 4 cut(s) 631, 748, 928, 1210
Tru1I TTAA 2 cut(s) 921, 977
Tru9I TTAA 2 cut(s) 921, 977
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 173, 262
TseI GCWGC 5 cut(s) 230, 290, 425, 1251, 1294
Tsp45I GTSAC 2 cut(s) 173, 262
TspDTI ATGAA 2 cut(s) 696, 1059
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 920
VneI GTGCAC 1 cut(s) 390
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 2 cut(s) 1061, 1350
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 5 cut(s) 297, 414, 653, 1146, 1193
ZrmI AGTACT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.