Prupe.1G010500_v2.0.a1

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008996
Physical Location & Seq
Forward (+)
802797 .. 811047
8251 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G010500.1

Sequence Viewer

Length: 1236 bp
ATGGCTGGCGTATCTCTGAAGTGCGGGGACTGTGGGGCTCTCCTGAAGTCCGTGGAGGAAGCCCAAGAGCATGCCGAGCTTACCTCCCACTCCAACTTCTCTGAGTCAACCGAAGCTGTTCTCAACCTCGTCTGTTCTTCTTGCGGCAAACCATGCCGATCCAAAACCGAAAGTGATTTGCATACCAAAAGAACGGGGCATACCGAGTTTGTTGATAAGACTGCGGATACAGTAAAGCCGATAAGTTTGGAGGTTCCAAAGGTGACAGCTTCAGAGTCCGAAGAGGCTGTTGGTGCAAGTAGACAGGCAGAAGAAATGGTTGTTCCAGAGGTTGACAAAAAGCTGCTTGAGGAACTCGAAGGAATGGGATTTTCAATAGCCCGGGCAACCCGTGCACTTCACTATTCTGGTAATGCTAGCCTGGAGGCTGCAGTCAATTGGGTGGTTGAACATGAGAATGATCCAGACATAGATCAAATGCCCTCAGTACCAGTCAACACCAAAGTTGAGGCTCCAAAACCTTCTCTCACGCCAGAGCAATTGAAAGCCAAGCAACAAGAGCTTAGGGAGAAAGCTCGCAAGAAGAAAGAAGAAGAGGAGAAGAGAATGGAAAAAGAAAAAGAAAAGGAGAGGATTCGAGTAGGCAAGGAACTCTTAGAAGCGAAGAGAATGGAAGAAGAAAATGAAAGAAAACGGATTGTGGCCTTGCGAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCTAGGGAAAAGATTCGTCAAAAATTGGAGGAAGATAAGGCAGAAAGGAGGAGGAGACTTGGGTTGCCACCAGAAGATCCTTCAACTGCAAAACCTGCTGCACCTGTTGTGGAAGAGAAAAAGAGCTCATTGCCCATAAGGCCTGCTACAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCTCTCAAGCAGAACCACAAGGAGGACGATGCCAAAGTGAAGAGAGCATTCCAGACTCTTTTAACTTTTGTAGGGAATGTTGCCAGAAATCCCGATGAGGAGAAATATAGAAAAATAAGACTCACTAACCAATCTTTCCAGGATAGAGTTGGTTCGTTCAAAGGAGGTATTGAGTTTCTTGAGTTGTGCGAGTTTGAGAGGGTAGAAGGGAGCGAGTTCTTGTTTCTTCCTAGGGACAAGGTTGACATGGCAGTGCTGAATTCAGCTGGGTCTGAGCTAGACTCTGCAATAAAGAATCCCTTTTTCGGTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

412

Amino Acids

46.41

Weight (kDa)

6.15

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 301
AciI CCGC 4 cut(s) 24, 144, 224, 716
AclWI GGATC 3 cut(s) 153, 455, 809
AcsI RAATTY 1 cut(s) 1177
AcuI CTGAAG 3 cut(s) 38, 65, 255
AfaI GTAC 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 940, 1223
AgsI TTSAA 5 cut(s) 375, 449, 544, 822, 1078
AjnI CCWGG 2 cut(s) 420, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
Alw21I GWGCWC 2 cut(s) 397, 866
Alw26I GTCTC 1 cut(s) 787
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 3 cut(s) 153, 455, 809
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 2 cut(s) 702, 878
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 343, 428, 836
ApoI RAATTY 1 cut(s) 1177
Asp700I GAANNNNTTC 2 cut(s) 117, 750
AspA2I CCTAGG 1 cut(s) 1148
AsuC2I CCSGG 2 cut(s) 382, 383
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 381
AvrII CCTAGG 1 cut(s) 1148
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 40, 866
Bbv12I GWGCWC 2 cut(s) 397, 866
BbvI GCAGC 3 cut(s) 330, 415, 823
BciT130I CCWGG 2 cut(s) 422, 1058
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 2 cut(s) 382, 383
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 4 cut(s) 417, 741, 1149, 1196
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 841
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 877
BisI GCNGC 4 cut(s) 145, 344, 429, 837
BlnI CCTAGG 1 cut(s) 1148
BlsI GCNGC 4 cut(s) 146, 345, 430, 838
Bme1390I CCNGG 4 cut(s) 382, 383, 422, 1058
BmeT110I CYCGRG 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 255, 513
BmrFI CCNGG 4 cut(s) 382, 383, 422, 1058
BmsI GCATC 1 cut(s) 937
BmtI GCTAGC 1 cut(s) 420
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 1184, 1216
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 563
BpuEI CTTGAG 3 cut(s) 368, 908, 1118
BpuMI CCSGG 2 cut(s) 382, 383
BsaJI CCNNGG 3 cut(s) 51, 381, 1148
Bsc4I CCNNNNNNNGG 2 cut(s) 940, 1223
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 866
BseBI CCWGG 2 cut(s) 422, 1058
BseDI CCNNGG 3 cut(s) 51, 381, 1148
BseLI CCNNNNNNNGG 2 cut(s) 940, 1223
BseMI GCAATG 1 cut(s) 866
BseMII CTCAG 3 cut(s) 93, 498, 1182
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 4 cut(s) 611, 802, 805, 1031
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 330, 415, 823
BseYI CCCAGC 1 cut(s) 1184
BsgI GTGCAG 1 cut(s) 822
BshFI GGCC 2 cut(s) 704, 880
BsiHKAI GWGCWC 2 cut(s) 397, 866
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 2 cut(s) 41, 1166
BslI CCNNNNNNNGG 2 cut(s) 940, 1223
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 2 cut(s) 41, 1166
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 2 cut(s) 704, 880
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 40, 397, 866
Bsp143I GATC 5 cut(s) 158, 460, 472, 814, 917
BspACI CCGC 4 cut(s) 24, 144, 224, 716
BspANI GGCC 2 cut(s) 704, 880
BspCNI CTCAG 3 cut(s) 94, 497, 1183
BspLI GGNNCC 2 cut(s) 255, 513
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 841
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 153, 455, 809
BsrDI GCAATG 1 cut(s) 866
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 51, 381, 1148
BssMI GATC 5 cut(s) 158, 460, 472, 814, 917
BssT1I CCWWGG 1 cut(s) 1148
Bst2UI CCWGG 2 cut(s) 422, 1058
Bst4CI ACNGT 2 cut(s) 32, 232
Bst6I CTCTTC 7 cut(s) 276, 588, 596, 659, 723, 846, 953
BstAPI GCANNNNNTGC 3 cut(s) 153, 392, 833
BstC8I GCNNGC 5 cut(s) 7, 72, 418, 577, 882
BstDEI CTNAG 5 cut(s) 102, 484, 563, 655, 1191
BstDSI CCRYGG 1 cut(s) 51
BstKTI GATC 5 cut(s) 161, 463, 475, 817, 920
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 5 cut(s) 158, 460, 472, 814, 917
BstMWI GCNNNNNNNGC 8 cut(s) 76, 153, 293, 392, 559, 833, 877, 890
BstNI CCWGG 2 cut(s) 422, 1058
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 4 cut(s) 380, 381, 420, 1056
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 330, 415, 823
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 704, 880
BtgI CCRYGG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 1176
BtsIMutI CAGTG 1 cut(s) 1176
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 5 cut(s) 7, 72, 418, 577, 882
Cfr9I CCCGGG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 488
CviAII CATG 4 cut(s) 71, 153, 452, 1165
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 5 cut(s) 102, 484, 563, 655, 1191
DpnI GATC 5 cut(s) 160, 462, 474, 816, 919
DpnII GATC 5 cut(s) 158, 460, 472, 814, 917
Eam1104I CTCTTC 7 cut(s) 276, 588, 596, 659, 723, 846, 953
EarI CTCTTC 7 cut(s) 276, 588, 596, 659, 723, 846, 953
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 1148
Eco147I AGGCCT 1 cut(s) 880
Eco24I GRGCYC 2 cut(s) 40, 866
Eco53kI GAGCTC 1 cut(s) 864
Eco57I CTGAAG 3 cut(s) 38, 65, 255
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 864
EcoRI GAATTC 1 cut(s) 1177
EcoRII CCWGG 2 cut(s) 420, 1056
EcoT14I CCWWGG 1 cut(s) 1148
EcoT38I GRGCYC 2 cut(s) 40, 866
ErhI CCWWGG 1 cut(s) 1148
FaeI CATG 4 cut(s) 74, 156, 455, 1168
FaiI YATR 9 cut(s) 72, 154, 183, 201, 453, 470, 875, 1026, 1166
FalI AAGNNNNNCTT 4 cut(s) 638, 670, 1202, 1234
FaqI GGGAC 2 cut(s) 41, 1166
FatI CATG 4 cut(s) 70, 152, 451, 1164
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 145, 344, 429, 837
FriOI GRGCYC 2 cut(s) 40, 866
Fsp4HI GCNGC 4 cut(s) 145, 344, 429, 837
FspBI CTAG 4 cut(s) 417, 741, 1149, 1196
GluI GCNGC 4 cut(s) 145, 344, 429, 837
GsaI CCCAGC 1 cut(s) 1188
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 2 cut(s) 704, 880
HapII CCGG 1 cut(s) 382
Hin1II CATG 4 cut(s) 74, 156, 455, 1168
HincII GTYRAC 4 cut(s) 108, 334, 496, 1162
HindII GTYRAC 4 cut(s) 108, 334, 496, 1162
HinfI GANTC 8 cut(s) 104, 275, 634, 751, 973, 1038, 1199, 1213
HpaII CCGG 1 cut(s) 382
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 6 cut(s) 108, 302, 334, 395, 496, 1162
Hpy188I TCNGA 5 cut(s) 18, 103, 274, 280, 1192
Hpy188III TCNNGA 6 cut(s) 43, 326, 464, 970, 1010, 1097
Hpy8I GTNNAC 6 cut(s) 108, 302, 334, 395, 496, 1162
HpyAV CCTTC 4 cut(s) 353, 531, 828, 1118
HpyCH4III ACNGT 2 cut(s) 32, 232
HpyCH4V TGCA 7 cut(s) 181, 296, 395, 431, 827, 839, 1205
HpyF10VI GCNNNNNNNGC 8 cut(s) 76, 153, 293, 392, 559, 833, 877, 890
HpyF3I CTNAG 5 cut(s) 102, 484, 563, 655, 1191
Hsp92II CATG 4 cut(s) 74, 156, 455, 1168
Kzo9I GATC 5 cut(s) 158, 460, 472, 814, 917
LmnI GCTCC 2 cut(s) 517, 1128
Lsp1109I GCAGC 3 cut(s) 330, 415, 823
LweI GCATC 1 cut(s) 937
MaeI CTAG 4 cut(s) 417, 741, 1149, 1196
MaeIII GTNAC 1 cut(s) 262
MalI GATC 5 cut(s) 160, 462, 474, 816, 919
MboI GATC 5 cut(s) 158, 460, 472, 814, 917
MfeI CAATTG 2 cut(s) 436, 539
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 3 cut(s) 40, 397, 866
MluCI AATT 4 cut(s) 436, 539, 761, 1177
MlyI GAGTC 5 cut(s) 113, 284, 967, 1032, 1193
MmeI TCCRAC 1 cut(s) 117
MroXI GAANNNNTTC 2 cut(s) 117, 750
MseI TTAA 2 cut(s) 980, 1234
MslI CAYNNNNRTG 2 cut(s) 456, 1169
MspA1I CMGCKG 1 cut(s) 1184
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 4 cut(s) 382, 383, 422, 1058
MunI CAATTG 2 cut(s) 436, 539
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 2 cut(s) 422, 1058
MwoI GCNNNNNNNGC 8 cut(s) 76, 153, 293, 392, 559, 833, 877, 890
NciI CCSGG 2 cut(s) 382, 383
NdeII GATC 5 cut(s) 158, 460, 472, 814, 917
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 4 cut(s) 74, 156, 455, 1168
NlaIV GGNNCC 2 cut(s) 255, 513
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 880
PctI GAATGC 1 cut(s) 965
PdmI GAANNNNTTC 2 cut(s) 117, 750
PfeI GAWTC 3 cut(s) 634, 751, 1213
PfoI TCCNGGA 1 cut(s) 1056
PkrI GCNGC 4 cut(s) 146, 345, 430, 838
PleI GAGTC 5 cut(s) 112, 283, 967, 1032, 1193
PpsI GAGTC 5 cut(s) 112, 283, 967, 1032, 1193
Psp124BI GAGCTC 1 cut(s) 866
Psp6I CCWGG 2 cut(s) 420, 1056
PspFI CCCAGC 1 cut(s) 1184
PspGI CCWGG 2 cut(s) 420, 1056
PspN4I GGNNCC 2 cut(s) 255, 513
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 1184
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
RseI CAYNNNNRTG 2 cut(s) 456, 1169
SacI GAGCTC 1 cut(s) 866
SaqAI TTAA 2 cut(s) 980, 1234
SatI GCNGC 4 cut(s) 145, 344, 429, 837
Sau3AI GATC 5 cut(s) 158, 460, 472, 814, 917
SchI GAGTC 5 cut(s) 113, 284, 967, 1032, 1193
ScrFI CCNGG 4 cut(s) 382, 383, 422, 1058
SduI GDGCHC 3 cut(s) 40, 397, 866
SfaNI GCATC 1 cut(s) 937
SfcI CTRYAG 1 cut(s) 429
SmaI CCCGGG 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 456, 1169
SmlI CTYRAG 3 cut(s) 347, 923, 1097
SmoI CTYRAG 3 cut(s) 347, 923, 1097
SphI GCATGC 1 cut(s) 74
SrfI GCCCGGGC 1 cut(s) 383
Sse9I AATT 4 cut(s) 436, 539, 761, 1177
SseBI AGGCCT 1 cut(s) 880
SsiI CCGC 4 cut(s) 24, 144, 224, 716
SspMI CTAG 4 cut(s) 417, 741, 1149, 1196
SstI GAGCTC 1 cut(s) 866
StuI AGGCCT 1 cut(s) 880
StyD4I CCNGG 4 cut(s) 380, 381, 420, 1056
StyI CCWWGG 1 cut(s) 1148
TaaI ACNGT 2 cut(s) 32, 232
TaqI TCGA 2 cut(s) 357, 637
TasI AATT 4 cut(s) 436, 539, 761, 1177
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 3 cut(s) 634, 751, 1213
Tru1I TTAA 2 cut(s) 980, 1234
Tru9I TTAA 2 cut(s) 980, 1234
TscAI CASTG 1 cut(s) 1176
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 343, 428, 836
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 2 cut(s) 40, 709
TspMI CCCGGG 1 cut(s) 381
TspRI CASTG 1 cut(s) 1176
VneI GTGCAC 1 cut(s) 393
XapI RAATTY 1 cut(s) 1177
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 1064
XmaI CCCGGG 1 cut(s) 381
XmaJI CCTAGG 1 cut(s) 1148
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 2 cut(s) 117, 750
XspI CTAG 4 cut(s) 417, 741, 1149, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.