26S proteasome non-ATPase regulatory subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20580 AT4G28470 |
| fragaria_vesca | FvH4_4g14560 |
| malus_domestica | MD09G1242100.v1.1 MD17G1234500.v1.1 |
| prunus_persica | Prupe.3G134800_v2.0.a1 |
| pyrus_communis | pycom09g16070 |
| rosa_chinensis | RchiOBHm_Chr4g0418261 |
| rosa_laevigata | RLG00000007882 RLG00000014797 |
| rosa_multiflora | Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014 |
| rosa_roxburghii | Rroxscaffold_5G00361020 Rroxscaffold_5G00361440 |
| rosa_rugosa | Rorug04G0151500 |
| rosa_samantha | Rh4BG217500 Rh4CG224800 Rh4DG211700 |
| rosa_wichuraiana | Rw4G018100 Rw6G006980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2132 |
| Acc36I | ACCTGC | 2 cut(s) | 1266, 1858 |
| AccII | CGCG | 1 cut(s) | 659 |
| AciI | CCGC | 6 cut(s) | 35, 527, 1352, 1393, 2069, 2366 |
| AclWI | GGATC | 7 cut(s) | 8, 89, 1334, 1376, 1599, 1610, 1845 |
| AcoI | YGGCCR | 2 cut(s) | 1801, 2464 |
| AcsI | RAATTY | 3 cut(s) | 592, 698, 1308 |
| AcuI | CTGAAG | 5 cut(s) | 71, 225, 543, 707, 1905 |
| AdeI | CACNNNGTG | 1 cut(s) | 2276 |
| AfaI | GTAC | 5 cut(s) | 326, 480, 662, 1256, 2202 |
| AfeI | AGCGCT | 1 cut(s) | 1189 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 98, 1636, 2362 |
| AflIII | ACRYGT | 1 cut(s) | 657 |
| AgeI | ACCGGT | 1 cut(s) | 750 |
| AhlI | ACTAGT | 2 cut(s) | 475, 605 |
| AjnI | CCWGG | 2 cut(s) | 97, 258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2522, 2554 |
| Alw26I | GTCTC | 2 cut(s) | 1655, 2080 |
| AlwI | GGATC | 7 cut(s) | 8, 89, 1334, 1376, 1599, 1610, 1845 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor51HI | AGCGCT | 1 cut(s) | 1189 |
| AoxI | GGCC | 4 cut(s) | 984, 1801, 2194, 2464 |
| ApeKI | GCWGC | 9 cut(s) | 392, 427, 1190, 1193, 2128, 2267, 2293, 2371, 2519 |
| ApoI | RAATTY | 3 cut(s) | 592, 698, 1308 |
| AseI | ATTAAT | 1 cut(s) | 230 |
| AsiGI | ACCGGT | 1 cut(s) | 750 |
| AspLEI | GCGC | 7 cut(s) | 49, 733, 1190, 1348, 1585, 1975, 2133 |
| AspS9I | GGNCC | 1 cut(s) | 1847 |
| AsuHPI | GGTGA | 7 cut(s) | 362, 548, 610, 1832, 2253, 2537, 2554 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 1847 |
| AxyI | CCTNAGG | 1 cut(s) | 2080 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1065, 1098 |
| BalI | TGGCCA | 1 cut(s) | 2466 |
| BauI | CACGAG | 1 cut(s) | 1652 |
| BbsI | GAAGAC | 3 cut(s) | 608, 1732, 1973 |
| BbvI | GCAGC | 9 cut(s) | 404, 414, 1177, 1180, 2115, 2279, 2280, 2383, 2506 |
| BccI | CCATC | 5 cut(s) | 875, 1019, 1393, 1580, 2475 |
| BceAI | ACGGC | 1 cut(s) | 163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1896, 1930 |
| BciT130I | CCWGG | 2 cut(s) | 99, 260 |
| BciVI | GTATCC | 1 cut(s) | 720 |
| BclI | TGATCA | 1 cut(s) | 1147 |
| BcoDI | GTCTC | 2 cut(s) | 1655, 2080 |
| BcuI | ACTAGT | 2 cut(s) | 475, 605 |
| BfaI | CTAG | 8 cut(s) | 11, 407, 456, 476, 606, 933, 963, 2623 |
| BfmI | CTRYAG | 1 cut(s) | 1931 |
| BfoI | RGCGCY | 4 cut(s) | 50, 1191, 1349, 1976 |
| BfuAI | ACCTGC | 2 cut(s) | 1266, 1858 |
| BfuI | GTATCC | 1 cut(s) | 720 |
| BglII | AGATCT | 2 cut(s) | 40, 967 |
| BisI | GCNGC | 9 cut(s) | 393, 428, 1191, 1194, 2129, 2268, 2294, 2372, 2520 |
| BlpI | GCTNAGC | 1 cut(s) | 938 |
| BlsI | GCNGC | 9 cut(s) | 394, 429, 1192, 1195, 2130, 2269, 2295, 2373, 2521 |
| Bme1390I | CCNGG | 2 cut(s) | 99, 260 |
| Bme18I | GGWCC | 1 cut(s) | 1847 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 1 cut(s) | 1847 |
| BmiI | GGNNCC | 1 cut(s) | 2101 |
| BmrFI | CCNGG | 2 cut(s) | 99, 260 |
| BmsI | GCATC | 3 cut(s) | 14, 859, 1933 |
| BpiI | GAAGAC | 3 cut(s) | 608, 1732, 1973 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1764, 1796 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 938 |
| BpuEI | CTTGAG | 6 cut(s) | 593, 992, 1551, 1677, 1766, 2175 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1836 |
| BsaI | GGTCTC | 2 cut(s) | 1655, 2080 |
| BsaJI | CCNNGG | 5 cut(s) | 98, 300, 1645, 1660, 1843 |
| BsaWI | WCCGGW | 2 cut(s) | 649, 750 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 98, 1636, 2362 |
| Bse118I | RCCGGY | 2 cut(s) | 750, 2522 |
| Bse1I | ACTGG | 4 cut(s) | 66, 621, 2488, 2507 |
| Bse21I | CCTNAGG | 1 cut(s) | 2080 |
| Bse3DI | GCAATG | 4 cut(s) | 915, 1558, 1884, 2067 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1836 |
| BseBI | CCWGG | 2 cut(s) | 99, 260 |
| BseDI | CCNNGG | 5 cut(s) | 98, 300, 1645, 1660, 1843 |
| BseGI | GGATG | 9 cut(s) | 679, 813, 886, 1120, 1228, 1837, 1950, 2452, 2467 |
| BseJI | GATNNNNATC | 1 cut(s) | 1836 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 98, 1636, 2362 |
| BseMI | GCAATG | 4 cut(s) | 915, 1558, 1884, 2067 |
| BseMII | CTCAG | 2 cut(s) | 952, 1451 |
| BseNI | ACTGG | 4 cut(s) | 66, 621, 2488, 2507 |
| BseRI | GAGGAG | 1 cut(s) | 1838 |
| BseXI | GCAGC | 9 cut(s) | 404, 414, 1177, 1180, 2115, 2279, 2280, 2383, 2506 |
| BsgI | GTGCAG | 2 cut(s) | 2115, 2390 |
| Bsh1236I | CGCG | 1 cut(s) | 659 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2248 |
| BshFI | GGCC | 4 cut(s) | 986, 1803, 2196, 2466 |
| BshTI | ACCGGT | 1 cut(s) | 750 |
| BsiEI | CGRYCG | 1 cut(s) | 2248 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 6 cut(s) | 311, 650, 751, 1343, 1764, 2523 |
| BslFI | GGGAC | 3 cut(s) | 381, 1908, 2405 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 98, 1636, 2362 |
| BsmAI | GTCTC | 2 cut(s) | 1655, 2080 |
| BsmFI | GGGAC | 3 cut(s) | 381, 1908, 2405 |
| BsmI | GAATGC | 3 cut(s) | 1088, 1671, 2296 |
| BsnI | GGCC | 4 cut(s) | 986, 1803, 2196, 2466 |
| Bso31I | GGTCTC | 2 cut(s) | 1655, 2080 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1407I | TGTACA | 1 cut(s) | 2200 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 938 |
| BspACI | CCGC | 6 cut(s) | 35, 527, 1352, 1393, 2069, 2366 |
| BspANI | GGCC | 4 cut(s) | 986, 1803, 2196, 2466 |
| BspCNI | CTCAG | 2 cut(s) | 951, 1450 |
| BspFNI | CGCG | 1 cut(s) | 659 |
| BspHI | TCATGA | 1 cut(s) | 1477 |
| BspLI | GGNNCC | 1 cut(s) | 2101 |
| BspMI | ACCTGC | 2 cut(s) | 1266, 1858 |
| BspPI | GGATC | 7 cut(s) | 8, 89, 1334, 1376, 1599, 1610, 1845 |
| BspTNI | GGTCTC | 2 cut(s) | 1655, 2080 |
| BsrDI | GCAATG | 4 cut(s) | 915, 1558, 1884, 2067 |
| BsrFI | RCCGGY | 2 cut(s) | 750, 2522 |
| BsrGI | TGTACA | 1 cut(s) | 2200 |
| BsrI | ACTGG | 4 cut(s) | 66, 621, 2488, 2507 |
| BssAI | RCCGGY | 2 cut(s) | 750, 2522 |
| BssECI | CCNNGG | 5 cut(s) | 98, 300, 1645, 1660, 1843 |
| BssSI | CACGAG | 1 cut(s) | 1652 |
| BssT1I | CCWWGG | 2 cut(s) | 1645, 1660 |
| Bst2BI | CACGAG | 1 cut(s) | 1652 |
| Bst2UI | CCWGG | 2 cut(s) | 99, 260 |
| Bst4CI | ACNGT | 8 cut(s) | 350, 567, 1132, 1218, 1319, 1935, 2249, 2392 |
| Bst6I | CTCTTC | 3 cut(s) | 71, 1551, 2177 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2066 |
| BstAUI | TGTACA | 1 cut(s) | 2200 |
| BstC8I | GCNNGC | 5 cut(s) | 1350, 1627, 2180, 2460, 2464 |
| BstDEI | CTNAG | 7 cut(s) | 388, 585, 664, 938, 1437, 2033, 2080 |
| BstDSI | CCRYGG | 1 cut(s) | 1843 |
| BstF5I | GGATG | 9 cut(s) | 679, 813, 886, 1120, 1228, 1837, 1950, 2452, 2467 |
| BstFNI | CGCG | 1 cut(s) | 659 |
| BstH2I | RGCGCY | 4 cut(s) | 50, 1191, 1349, 1976 |
| BstHHI | GCGC | 7 cut(s) | 49, 733, 1190, 1348, 1585, 1975, 2133 |
| BstMAI | GTCTC | 2 cut(s) | 1655, 2080 |
| BstMCI | CGRYCG | 1 cut(s) | 2248 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 665, 1874, 2034, 2066, 2117 |
| BstNI | CCWGG | 2 cut(s) | 99, 260 |
| BstNSI | RCATGY | 2 cut(s) | 581, 1993 |
| BstSCI | CCNGG | 2 cut(s) | 97, 258 |
| BstSFI | CTRYAG | 1 cut(s) | 1931 |
| BstUI | CGCG | 1 cut(s) | 659 |
| BstV1I | GCAGC | 9 cut(s) | 404, 414, 1177, 1180, 2115, 2279, 2280, 2383, 2506 |
| BstV2I | GAAGAC | 3 cut(s) | 608, 1732, 1973 |
| BstX2I | RGATCY | 5 cut(s) | 13, 40, 967, 1381, 1615 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2326 |
| BstYI | RGATCY | 5 cut(s) | 13, 40, 967, 1381, 1615 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2080 |
| BsuI | GTATCC | 1 cut(s) | 720 |
| BsuRI | GGCC | 4 cut(s) | 986, 1803, 2196, 2466 |
| BtgI | CCRYGG | 1 cut(s) | 1843 |
| BtgZI | GCGATG | 1 cut(s) | 795 |
| BtsCI | GGATG | 9 cut(s) | 679, 813, 886, 1120, 1228, 1837, 1950, 2452, 2467 |
| BtsI | GCAGTG | 2 cut(s) | 1048, 1512 |
| BtsIMutI | CAGTG | 5 cut(s) | 284, 1048, 1137, 1214, 1512 |
| BveI | ACCTGC | 2 cut(s) | 1266, 1858 |
| Cac8I | GCNNGC | 5 cut(s) | 1350, 1627, 2180, 2460, 2464 |
| CciI | TCATGA | 1 cut(s) | 1477 |
| CfoI | GCGC | 7 cut(s) | 49, 733, 1190, 1348, 1585, 1975, 2133 |
| Cfr10I | RCCGGY | 2 cut(s) | 750, 2522 |
| Cfr13I | GGNCC | 1 cut(s) | 1847 |
| CseI | GACGC | 3 cut(s) | 665, 1490, 1610 |
| Csp6I | GTAC | 5 cut(s) | 325, 479, 661, 1255, 2201 |
| CspAI | ACCGGT | 1 cut(s) | 750 |
| CviQI | GTAC | 5 cut(s) | 325, 479, 661, 1255, 2201 |
| DdeI | CTNAG | 7 cut(s) | 388, 585, 664, 938, 1437, 2033, 2080 |
| DraIII | CACNNNGTG | 1 cut(s) | 2276 |
| EaeI | YGGCCR | 2 cut(s) | 1801, 2464 |
| Eam1104I | CTCTTC | 3 cut(s) | 71, 1551, 2177 |
| EarI | CTCTTC | 3 cut(s) | 71, 1551, 2177 |
| Eco130I | CCWWGG | 2 cut(s) | 1645, 1660 |
| Eco147I | AGGCCT | 1 cut(s) | 2196 |
| Eco31I | GGTCTC | 2 cut(s) | 1655, 2080 |
| Eco47I | GGWCC | 1 cut(s) | 1847 |
| Eco47III | AGCGCT | 1 cut(s) | 1189 |
| Eco57I | CTGAAG | 5 cut(s) | 71, 225, 543, 707, 1905 |
| Eco81I | CCTNAGG | 1 cut(s) | 2080 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 2 cut(s) | 97, 258 |
| EcoT14I | CCWWGG | 2 cut(s) | 1645, 1660 |
| EcoT22I | ATGCAT | 1 cut(s) | 1090 |
| ErhI | CCWWGG | 2 cut(s) | 1645, 1660 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 936, 968, 1001, 1033, 1479, 1511 |
| FaqI | GGGAC | 3 cut(s) | 381, 1908, 2405 |
| FauNDI | CATATG | 3 cut(s) | 438, 501, 1426 |
| FbaI | TGATCA | 1 cut(s) | 1147 |
| Fnu4HI | GCNGC | 9 cut(s) | 393, 428, 1191, 1194, 2129, 2268, 2294, 2372, 2520 |
| FokI | GGATG | 9 cut(s) | 686, 800, 893, 1127, 1235, 1844, 1937, 2454, 2459 |
| Fsp4HI | GCNGC | 9 cut(s) | 393, 428, 1191, 1194, 2129, 2268, 2294, 2372, 2520 |
| FspBI | CTAG | 8 cut(s) | 11, 407, 456, 476, 606, 933, 963, 2623 |
| FspI | TGCGCA | 1 cut(s) | 2132 |
| GlaI | GCGC | 7 cut(s) | 48, 732, 1189, 1347, 1584, 1974, 2132 |
| GluI | GCNGC | 9 cut(s) | 393, 428, 1191, 1194, 2129, 2268, 2294, 2372, 2520 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HaeII | RGCGCY | 4 cut(s) | 50, 1191, 1349, 1976 |
| HaeIII | GGCC | 4 cut(s) | 986, 1803, 2196, 2466 |
| HapII | CCGG | 6 cut(s) | 311, 650, 751, 1343, 1764, 2523 |
| HgaI | GACGC | 3 cut(s) | 665, 1490, 1610 |
| HhaI | GCGC | 7 cut(s) | 49, 733, 1190, 1348, 1585, 1975, 2133 |
| Hin6I | GCGC | 7 cut(s) | 47, 731, 1188, 1346, 1583, 1973, 2131 |
| HinP1I | GCGC | 7 cut(s) | 47, 731, 1188, 1346, 1583, 1973, 2131 |
| HincII | GTYRAC | 1 cut(s) | 532 |
| HindII | GTYRAC | 1 cut(s) | 532 |
| HindIII | AAGCTT | 1 cut(s) | 316 |
| HinfI | GANTC | 7 cut(s) | 103, 1229, 1465, 2048, 2280, 2401, 2545 |
| HpaII | CCGG | 6 cut(s) | 311, 650, 751, 1343, 1764, 2523 |
| HphI | GGTGA | 7 cut(s) | 362, 548, 610, 1832, 2253, 2537, 2554 |
| Hpy166II | GTNNAC | 3 cut(s) | 532, 771, 2395 |
| Hpy8I | GTNNAC | 3 cut(s) | 532, 771, 2395 |
| Hpy99I | CGWCG | 1 cut(s) | 659 |
| HpyAV | CCTTC | 9 cut(s) | 46, 569, 647, 938, 1805, 1822, 2177, 2573, 2581 |
| HpyCH4III | ACNGT | 8 cut(s) | 350, 567, 1132, 1218, 1319, 1935, 2249, 2392 |
| HpyCH4IV | ACGT | 1 cut(s) | 481 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 665, 1874, 2034, 2066, 2117 |
| HpyF3I | CTNAG | 7 cut(s) | 388, 585, 664, 938, 1437, 2033, 2080 |
| HpySE526I | ACGT | 1 cut(s) | 481 |
| HspAI | GCGC | 7 cut(s) | 47, 731, 1188, 1346, 1583, 1973, 2131 |
| Ksp22I | TGATCA | 1 cut(s) | 1147 |
| LmnI | GCTCC | 3 cut(s) | 236, 1171, 1495 |
| Lsp1109I | GCAGC | 9 cut(s) | 404, 414, 1177, 1180, 2115, 2279, 2280, 2383, 2506 |
| LweI | GCATC | 3 cut(s) | 14, 859, 1933 |
| MaeI | CTAG | 8 cut(s) | 11, 407, 456, 476, 606, 933, 963, 2623 |
| MaeII | ACGT | 1 cut(s) | 481 |
| MaeIII | GTNAC | 5 cut(s) | 350, 461, 1265, 1504, 1992 |
| MflI | RGATCY | 5 cut(s) | 13, 40, 967, 1381, 1615 |
| MlsI | TGGCCA | 1 cut(s) | 2466 |
| MluI | ACGCGT | 1 cut(s) | 657 |
| MluNI | TGGCCA | 1 cut(s) | 2466 |
| MlyI | GAGTC | 3 cut(s) | 1238, 1459, 2554 |
| MmeI | TCCRAC | 2 cut(s) | 2268, 2528 |
| Mox20I | TGGCCA | 1 cut(s) | 2466 |
| Mph1103I | ATGCAT | 1 cut(s) | 1090 |
| MscI | TGGCCA | 1 cut(s) | 2466 |
| MseI | TTAA | 5 cut(s) | 230, 759, 1083, 1710, 2024 |
| MslI | CAYNNNNRTG | 5 cut(s) | 375, 441, 1335, 2288, 2366 |
| Msp20I | TGGCCA | 1 cut(s) | 2466 |
| MspA1I | CMGCKG | 1 cut(s) | 1462 |
| MspI | CCGG | 6 cut(s) | 311, 650, 751, 1343, 1764, 2523 |
| MspR9I | CCNGG | 2 cut(s) | 99, 260 |
| Mva1269I | GAATGC | 3 cut(s) | 1088, 1671, 2296 |
| MvaI | CCWGG | 2 cut(s) | 99, 260 |
| MvnI | CGCG | 1 cut(s) | 659 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 665, 1874, 2034, 2066, 2117 |
| NdeI | CATATG | 3 cut(s) | 438, 501, 1426 |
| NlaIV | GGNNCC | 1 cut(s) | 2101 |
| NmeAIII | GCCGAG | 4 cut(s) | 325, 802, 1779, 2560 |
| NmuCI | GTSAC | 4 cut(s) | 350, 461, 1504, 1992 |
| NsbI | TGCGCA | 1 cut(s) | 2132 |
| NsiI | ATGCAT | 1 cut(s) | 1090 |
| NspI | RCATGY | 2 cut(s) | 581, 1993 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 1477 |
| PceI | AGGCCT | 1 cut(s) | 2196 |
| PctI | GAATGC | 3 cut(s) | 1088, 1671, 2296 |
| PfeI | GAWTC | 4 cut(s) | 103, 2048, 2280, 2401 |
| PflFI | GACNNNGTC | 1 cut(s) | 292 |
| PinAI | ACCGGT | 1 cut(s) | 750 |
| PkrI | GCNGC | 9 cut(s) | 394, 429, 1192, 1195, 2130, 2269, 2295, 2373, 2521 |
| PleI | GAGTC | 3 cut(s) | 1237, 1459, 2553 |
| PpsI | GAGTC | 3 cut(s) | 1237, 1459, 2553 |
| PshBI | ATTAAT | 1 cut(s) | 230 |
| Psp6I | CCWGG | 2 cut(s) | 97, 258 |
| PspGI | CCWGG | 2 cut(s) | 97, 258 |
| PspN4I | GGNNCC | 1 cut(s) | 2101 |
| PspPI | GGNCC | 1 cut(s) | 1847 |
| PsuI | RGATCY | 5 cut(s) | 13, 40, 967, 1381, 1615 |
| PsyI | GACNNNGTC | 1 cut(s) | 292 |
| PvuII | CAGCTG | 1 cut(s) | 1462 |
| RsaI | GTAC | 5 cut(s) | 326, 480, 662, 1256, 2202 |
| RsaNI | GTAC | 5 cut(s) | 325, 479, 661, 1255, 2201 |
| RseI | CAYNNNNRTG | 5 cut(s) | 375, 441, 1335, 2288, 2366 |
| SaqAI | TTAA | 5 cut(s) | 230, 759, 1083, 1710, 2024 |
| SatI | GCNGC | 9 cut(s) | 393, 428, 1191, 1194, 2129, 2268, 2294, 2372, 2520 |
| Sau96I | GGNCC | 1 cut(s) | 1847 |
| SchI | GAGTC | 3 cut(s) | 1238, 1459, 2554 |
| ScrFI | CCNGG | 2 cut(s) | 99, 260 |
| SfaNI | GCATC | 3 cut(s) | 14, 859, 1933 |
| SfcI | CTRYAG | 1 cut(s) | 1931 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 1847 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 375, 441, 1335, 2288, 2366 |
| SmlI | CTYRAG | 7 cut(s) | 119, 572, 971, 1566, 1692, 1781, 2190 |
| SmoI | CTYRAG | 7 cut(s) | 119, 572, 971, 1566, 1692, 1781, 2190 |
| SpeI | ACTAGT | 2 cut(s) | 475, 605 |
| SseBI | AGGCCT | 1 cut(s) | 2196 |
| SsiI | CCGC | 6 cut(s) | 35, 527, 1352, 1393, 2069, 2366 |
| SspMI | CTAG | 8 cut(s) | 11, 407, 456, 476, 606, 933, 963, 2623 |
| StuI | AGGCCT | 1 cut(s) | 2196 |
| StyD4I | CCNGG | 2 cut(s) | 97, 258 |
| StyI | CCWWGG | 2 cut(s) | 1645, 1660 |
| TaaI | ACNGT | 8 cut(s) | 350, 567, 1132, 1218, 1319, 1935, 2249, 2392 |
| TaiI | ACGT | 1 cut(s) | 484 |
| TaqI | TCGA | 7 cut(s) | 120, 193, 703, 1594, 2141, 2428, 2501 |
| TaqII | GACCGA | 1 cut(s) | 1097 |
| TatI | WGTACW | 2 cut(s) | 324, 2200 |
| TfiI | GAWTC | 4 cut(s) | 103, 2048, 2280, 2401 |
| Tru1I | TTAA | 5 cut(s) | 230, 759, 1083, 1710, 2024 |
| Tru9I | TTAA | 5 cut(s) | 230, 759, 1083, 1710, 2024 |
| TscAI | CASTG | 5 cut(s) | 291, 1048, 1137, 1221, 1519 |
| TseFI | GTSAC | 4 cut(s) | 350, 461, 1504, 1992 |
| TseI | GCWGC | 9 cut(s) | 392, 427, 1190, 1193, 2128, 2267, 2293, 2371, 2519 |
| Tsp45I | GTSAC | 4 cut(s) | 350, 461, 1504, 1992 |
| TspGWI | ACGGA | 3 cut(s) | 131, 1860, 1943 |
| TspRI | CASTG | 5 cut(s) | 291, 1048, 1137, 1221, 1519 |
| Tth111I | GACNNNGTC | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 1847 |
| VspI | ATTAAT | 1 cut(s) | 230 |
| XapI | RAATTY | 3 cut(s) | 592, 698, 1308 |
| XbaI | TCTAGA | 1 cut(s) | 406 |
| XceI | RCATGY | 2 cut(s) | 581, 1993 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1063, 1149, 1283 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 8 cut(s) | 11, 407, 456, 476, 606, 933, 963, 2623 |
| Zsp2I | ATGCAT | 1 cut(s) | 1090 |