Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313613.1

Orthogroup ID

OG0010697

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 626

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

tttcagatcagtgacgaaaatcctaattgtgacctaatgaaactggtacgacagattgttgcttttcacatgaggcacaatgctgaaactgaagtggttgacctgttggttgagattggagatcaccttaatctgctagctgagcatgtcgataagacgaattttaagaagacttgtctttatctcaccagttcagcaagataccttcctgccggaccagacgatgcgtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

77

Amino Acids

8.79

Weight (kDa)

5.11

Isoelectric Point (pI)

17.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20580 AT4G28470
fragaria_vesca	FvH4_4g14560
malus_domestica	MD09G1242100.v1.1 MD17G1234500.v1.1
prunus_persica	Prupe.3G134800_v2.0.a1
pyrus_communis	pycom09g16070
rosa_chinensis	RchiOBHm_Chr4g0418261
rosa_laevigata	RLG00000007882 RLG00000014797
rosa_multiflora	Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014
rosa_roxburghii	Rroxscaffold_5G00361020 Rroxscaffold_5G00361440
rosa_rugosa	Rorug04G0151500
rosa_samantha	Rh4BG217500 Rh4CG224800 Rh4DG211700
rosa_wichuraiana	Rw4G018100 Rw6G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	48, 230
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	116, 178
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	48, 189
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	48, 189
BsiSI	CCGG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	6, 121
Bsp1720I	GCTNAGC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	48, 189
BssMI	GATC	2 cut(s)	6, 121
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	9, 124
BstMBI	GATC	2 cut(s)	6, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	47, 229
CviAII	CATG	2 cut(s)	70, 146
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
CviQI	GTAC	2 cut(s)	47, 229
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	8, 123
DpnII	GATC	2 cut(s)	6, 121
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	111
FaeI	CATG	2 cut(s)	73, 149
FaiI	YATR	2 cut(s)	71, 147
FatI	CATG	2 cut(s)	69, 145
FspBI	CTAG	1 cut(s)	137
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	73, 149
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	116, 178
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	73, 149
Kzo9I	GATC	2 cut(s)	6, 121
LpnPI	CCDG	5 cut(s)	29, 116, 202, 222, 226
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	11, 29
MalI	GATC	2 cut(s)	8, 123
MboI	GATC	2 cut(s)	6, 121
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	2 cut(s)	25, 160
MnlI	CCTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	129, 165
MspI	CCGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	6, 121
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	73, 149
NmuCI	GTSAC	2 cut(s)	11, 29
NspI	RCATGY	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	48, 230
RsaNI	GTAC	2 cut(s)	47, 229
SaqAI	TTAA	2 cut(s)	129, 165
Sau3AI	GATC	2 cut(s)	6, 121
Sau96I	GGNCC	1 cut(s)	215
SetI	ASST	5 cut(s)	36, 105, 129, 142, 207
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	25, 160
SspMI	CTAG	1 cut(s)	137
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	25, 160
Tru1I	TTAA	2 cut(s)	129, 165
Tru9I	TTAA	2 cut(s)	129, 165
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	11, 29
Tsp45I	GTSAC	2 cut(s)	11, 29
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.