Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010697

Physical Location & Seq

Genomic Coordinates Forward (+)

40690203 .. 40692929

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGGATTTGTCTGCGGAGGATTTGGCAGTGAAGCAAAAATTGGAGCTATATGTGGAGAGGGTTCAAGATCCTGATCCTCGGCTGCAGATGGTTGCTCTCGAGAGTATGAGGCACGAAATTCGTTCTTCAACCAGTTCAATGACGGCTGTTCCGAAGCCCTTGAAATATCTTCGCCCACATTACACAACTCTAAAATCATATTACGAAATAATGGGAGCTTCAGATTTGAAGATAAACCTGGCAGATATACTATCTGTTTTGGCACTGACCATGTCTGCTGAGGGAGAGCGGGAAAGCTTGAAGTACAGAATGTTGGCTGGTTCAAACGGTGACATTGGTTCATGGGGTCATGAATATGTCAGGAACTTAGCTGCAGAAATTGCTGAAGAATATGCCGATAATAAGCTGCAGTTTCAGATCAGTGATGAAAACCCTAATTGTGACCTAATGAAACTGGTACGACAGATTGTTGCTTTTCACATGAGGCACAATGCCGAAACTGAAGCGGTTGACCTCTTGGTTGAGATTGGAGATCACCTTAATCTGTTATTTGAGCATGTTGATAAGACGAATTTTAAGAAGACTTGCCTTTATCTGACGAGTTCAGCAAGATACCTTCCTGCCAGACCAGACGATGCGTACTTAGCTTTGGATATTGCATACAAGATATATCTGAAGTTTGGAGAATATCCAAATGCACTTCAGATTGCGCTTTTCGTTGATGGCCACCAGTTGATAAGGGAAGTGTTTACATCTTGTGATGATGTGCTGTGTAAAAAACAACTTTGCTACATGCTTGCTAGGCATGGTGGTAATTATTCAGTGCCTGATGATGATGATGATGATAACATGGATGGGGATAGTAATAACCGAGAGGTAATGCAGGACATTATTAATAACACTAAGCTCAGCGAAGGTTATCTTACCCTTGCTCGAGATCTTGAGGTCATGGAGGCCAAAACTCCACAGGATATATACAAGGCACACTTGCTTCATGGTCAAGTAAGTAGTAGTGTTGATTCAGCGCGACAGAACTTGGCCGACACATTTGTTAATGCATTCGTAAATGTGGGCTTTGGTCAGGATAAGTTGATGACGAGAGTTGAACCACCAAAAGATCATTGGCTTTTCAAGAATAAGGAGCATGGAAAGATCAGCGCTGCTGCAAGTCTAGGTATGATTTCACTGTGGGATGTTGACTCTGGATTTGCCCACATTGACAAGTACCTGCACAGCAATGACAACCATGTTATTGCTGGTGCCTTGTTGGGGATTGGAATTTTCAATTGCGGTGTCAAACATGATTGTGATCCAGCGCTGGCAATTTTGGGGGAATATGTAGATAGAGAAGATCCATCTATCCGCATTGGTGCAATAATGGGACTAGGGATTGCATATGCTGGTTCAAAGAATGAGCAGATAGGTAGTCAGCTGAATCCGATACTTAATGACGCAAAAGCTCCACTTGATGTGGTTACATTCACTGCAATCTCATTGGGGTTGATATTCATTGGTTCCTGCAATGAAGAGGTAGCTCAAGCTATCATACTTGCACTAATGGACCGAACTGACGCAGAGTTGGGAGACCCCCTTGCTCGCCTAATTTCGGTTAGCCTTGGCCTTGTGTACCTTGGGAAGCAAGACAACGTTGAAGCCACTGCTCAAGTTTCACAGACATTTAATGTAAAAATCAGAAGACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCTGGAACAGGAGATGTTCTCAAGGTTCAAACCCTTCTCGGCCATTGCTCGCAACATGTTGAGGAGAAGGGTGAAACTCACCAGGGACCTGCTGTGCTTGGAATTTCTATGGTAGCAATGGCTGAAGAATTGGGACTTGAAATGGCAATTCGTTCATTAGAGCGTCTTCTACAGTATGGACAACAAAGCATCCGGAAGGCAGCTCCTTTGGCCCTTGGTCTCCTTTGCATATCAAACCCAAAGGTCAATGTTATGGACACATTAAGCAGACTTAGCCATGATACAGATTCAGAAGTAGCAATGGCTGCAGTGGTTTCCTTAGGTTTGATAGGTGCAGGAACCAATAATGCCAGAATAGCTTGCATGCTTCGCAGTCTTTCAAGTTATTACTACAAAGATGCCAACCTTCTCTTCTGCGTGCGCATTGCTCAAGGTCTTGTACATTTAGGAAAGGGTTTATCGACTCTAAATCCATATCATTCCGACCGCTTCTTGCAATCACCAGCAGCACTTGGTGGAATCATAGTCATGCTGCACGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTATCTTGTCATGGCTGTGCAGCCAAGAATGTTGTTGACTGTGGACGAGAATCTCAAACCCTTGTCTGTCCCTGTTCGAGTGGGAAAAGCTGTGGATGTTGTTGGGCAGGCTGGCCATCCAAAAACAATAACCGGTTTCCAAACCCACTCAACACCGGTTGTTCTGGCAGCTGGTGAGAAAGCAGAGTTGGTGACTGAGAAATATATTCCCCTTTCTCCCTTCCTTGAAGGTTTTGTCATTTTGAAAGAAAATCTGGACTACAAGGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

864

Amino Acids

95.19

Weight (kDa)

5.43

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	14 - 330	1.2e-112	RPN1 N-terminal domain
RPN1_C	PF18051	808 - 861	8.8e-27	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20580 AT4G28470
fragaria_vesca	FvH4_4g14560
malus_domestica	MD09G1242100.v1.1 MD17G1234500.v1.1
prunus_persica	Prupe.3G134800_v2.0.a1
pyrus_communis	pycom09g16070
rosa_chinensis	RchiOBHm_Chr4g0418261
rosa_laevigata	RLG00000007882 RLG00000014797
rosa_multiflora	Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014
rosa_roxburghii	Rroxscaffold_5G00361020 Rroxscaffold_5G00361440
rosa_rugosa	Rorug04G0151500
rosa_samantha	Rh4BG217500 Rh4CG224800 Rh4DG211700
rosa_wichuraiana	Rw4G018100 Rw6G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2153
Acc36I	ACCTGC	2 cut(s)	1236, 1828
AccB1I	GGYRCC	1 cut(s)	1259
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	1027
AccIII	TCCGGA	1 cut(s)	1923
AciI	CCGC	6 cut(s)	14, 289, 506, 1290, 1363, 2218
AclI	AACGTT	1 cut(s)	1647
AclWI	GGATC	4 cut(s)	62, 68, 1304, 1346
AcoI	YGGCCR	4 cut(s)	724, 1038, 1771, 2434
AcsI	RAATTY	4 cut(s)	117, 571, 1278, 1833
AcuI	CTGAAG	6 cut(s)	204, 405, 522, 686, 695, 1875
AdeI	CACNNNGTG	1 cut(s)	2246
AfaI	GTAC	6 cut(s)	305, 459, 641, 1226, 1628, 2172
AfeI	AGCGCT	2 cut(s)	1159, 1317
AfiI	CCNNNNNNNGG	2 cut(s)	1269, 1606
AflIII	ACRYGT	1 cut(s)	1786
AgeI	ACCGGT	2 cut(s)	2453, 2476
AjnI	CCWGG	2 cut(s)	237, 1812
AjuI	GAANNNNNNNTTGG	6 cut(s)	23, 55, 2126, 2158, 2492, 2524
Alw26I	GTCTC	2 cut(s)	1578, 1955
AlwI	GGATC	4 cut(s)	62, 68, 1304, 1346
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	2 cut(s)	98, 933
Aor13HI	TCCGGA	1 cut(s)	1923
Aor51HI	AGCGCT	2 cut(s)	1159, 1317
AoxI	GGCC	7 cut(s)	724, 954, 1038, 1618, 1771, 1941, 2434
ApoI	RAATTY	4 cut(s)	117, 571, 1278, 1833
ArsI	GACNNNNNNTTYG	2 cut(s)	1190, 1222
AseI	ATTAAT	1 cut(s)	894
AsiGI	ACCGGT	2 cut(s)	2453, 2476
AspLEI	GCGC	5 cut(s)	712, 1027, 1160, 1318, 2154
AspS9I	GGNCC	3 cut(s)	1561, 1817, 1942
AsuHPI	GGTGA	7 cut(s)	341, 527, 1802, 1814, 2223, 2507, 2524
AvaI	CYCGRG	2 cut(s)	98, 933
AvaII	GGWCC	2 cut(s)	1561, 1817
AxyI	CCTNAGG	1 cut(s)	2050
BalI	TGGCCA	2 cut(s)	726, 2436
BanI	GGYRCC	1 cut(s)	1259
BbsI	GAAGAC	3 cut(s)	587, 1702, 1889
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	6 cut(s)	82, 716, 848, 1363, 2297, 2445
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	239, 1814
BcoDI	GTCTC	2 cut(s)	1578, 1955
BfaI	CTAG	4 cut(s)	801, 1172, 1385, 2593
BfmI	CTRYAG	5 cut(s)	83, 372, 407, 1901, 2037
BfoI	RGCGCY	2 cut(s)	1161, 1319
BfuAI	ACCTGC	2 cut(s)	1236, 1828
BglII	AGATCT	1 cut(s)	937
BlpI	GCTNAGC	1 cut(s)	908
Bme1390I	CCNGG	2 cut(s)	239, 1814
Bme18I	GGWCC	2 cut(s)	1561, 1817
BmeT110I	CYCGRG	2 cut(s)	98, 933
BmgT120I	GGNCC	3 cut(s)	1561, 1817, 1942
BmiI	GGNNCC	4 cut(s)	1261, 1516, 1818, 2071
BmrFI	CCNGG	2 cut(s)	239, 1814
BmsI	GCATC	3 cut(s)	625, 1929, 2119
BpiI	GAAGAC	3 cut(s)	587, 1702, 1889
BplI	GAGNNNNNCTC	2 cut(s)	1734, 1766
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	5 cut(s)	962, 1521, 1647, 1736, 2145
BsaBI	GATNNNNATC	2 cut(s)	72, 1308
BsaI	GGTCTC	2 cut(s)	1578, 1955
BsaJI	CCNNGG	5 cut(s)	77, 1615, 1630, 1813, 1945
BsaWI	WCCGGW	3 cut(s)	1923, 2453, 2476
Bsc4I	CCNNNNNNNGG	2 cut(s)	1269, 1606
Bse118I	RCCGGY	2 cut(s)	2453, 2476
Bse1I	ACTGG	3 cut(s)	132, 459, 730
Bse21I	CCTNAGG	1 cut(s)	2050
Bse3DI	GCAATG	6 cut(s)	1243, 1528, 1774, 1854, 2037, 2154
Bse8I	GATNNNNATC	2 cut(s)	72, 1308
BseAI	TCCGGA	1 cut(s)	1923
BseBI	CCWGG	2 cut(s)	239, 1814
BseDI	CCNNGG	5 cut(s)	77, 1615, 1630, 1813, 1945
BseGI	GGATG	5 cut(s)	859, 1198, 1920, 2422, 2437
BseJI	GATNNNNATC	2 cut(s)	72, 1308
BseLI	CCNNNNNNNGG	2 cut(s)	1269, 1606
BseMI	GCAATG	6 cut(s)	1243, 1528, 1774, 1854, 2037, 2154
BseMII	CTCAG	3 cut(s)	270, 922, 2508
BseNI	ACTGG	3 cut(s)	132, 459, 730
BseRI	GAGGAG	1 cut(s)	1808
BsgI	GTGCAG	4 cut(s)	1214, 2085, 2249, 2360
Bsh1236I	CGCG	1 cut(s)	1027
Bsh1285I	CGRYCG	1 cut(s)	2218
BshFI	GGCC	7 cut(s)	726, 956, 1040, 1620, 1773, 1943, 2436
BshNI	GGYRCC	1 cut(s)	1259
BshTI	ACCGGT	2 cut(s)	2453, 2476
BsiEI	CGRYCG	1 cut(s)	2218
BsiHKCI	CYCGRG	2 cut(s)	98, 933
BsiSI	CCGG	3 cut(s)	1924, 2454, 2477
BslFI	GGGAC	4 cut(s)	1395, 1830, 1878, 2375
BslI	CCNNNNNNNGG	2 cut(s)	1269, 1606
BsmAI	GTCTC	2 cut(s)	1578, 1955
BsmFI	GGGAC	4 cut(s)	1395, 1830, 1878, 2375
BsmI	GAATGC	1 cut(s)	1058
BsnI	GGCC	7 cut(s)	726, 956, 1040, 1620, 1773, 1943, 2436
Bso31I	GGTCTC	2 cut(s)	1578, 1955
BsoBI	CYCGRG	2 cut(s)	98, 933
Bsp13I	TCCGGA	1 cut(s)	1923
Bsp1407I	TGTACA	1 cut(s)	2170
Bsp143I	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
Bsp1720I	GCTNAGC	1 cut(s)	908
BspACI	CCGC	6 cut(s)	14, 289, 506, 1290, 1363, 2218
BspANI	GGCC	7 cut(s)	726, 956, 1040, 1620, 1773, 1943, 2436
BspCNI	CTCAG	3 cut(s)	271, 921, 2509
BspEI	TCCGGA	1 cut(s)	1923
BspFNI	CGCG	1 cut(s)	1027
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	1261, 1516, 1818, 2071
BspMAI	CTGCAG	4 cut(s)	87, 376, 411, 2041
BspMI	ACCTGC	2 cut(s)	1236, 1828
BspPI	GGATC	4 cut(s)	62, 68, 1304, 1346
BspT107I	GGYRCC	1 cut(s)	1259
BspTNI	GGTCTC	2 cut(s)	1578, 1955
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	6 cut(s)	1243, 1528, 1774, 1854, 2037, 2154
BsrFI	RCCGGY	2 cut(s)	2453, 2476
BsrGI	TGTACA	1 cut(s)	2170
BsrI	ACTGG	3 cut(s)	132, 459, 730
BssAI	RCCGGY	2 cut(s)	2453, 2476
BssECI	CCNNGG	5 cut(s)	77, 1615, 1630, 1813, 1945
BssMI	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
BssT1I	CCWWGG	3 cut(s)	1615, 1630, 1945
Bst2UI	CCWGG	2 cut(s)	239, 1814
Bst4CI	ACNGT	4 cut(s)	329, 1188, 1905, 2362
Bst6I	CTCTTC	2 cut(s)	1521, 2147
BstAPI	GCANNNNNTGC	2 cut(s)	380, 2036
BstAUI	TGTACA	1 cut(s)	2170
BstDEI	CTNAG	8 cut(s)	279, 367, 643, 903, 908, 2003, 2050, 2517
BstF5I	GGATG	5 cut(s)	859, 1198, 1920, 2422, 2437
BstFNI	CGCG	1 cut(s)	1027
BstH2I	RGCGCY	2 cut(s)	1161, 1319
BstHHI	GCGC	5 cut(s)	712, 1027, 1160, 1318, 2154
BstKTI	GATC	9 cut(s)	70, 76, 420, 535, 940, 1120, 1155, 1312, 1354
BstMAI	GTCTC	2 cut(s)	1578, 1955
BstMBI	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
BstMCI	CGRYCG	1 cut(s)	2218
BstMWI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1940, 2004, 2036, 2087, 2100
BstNI	CCWGG	2 cut(s)	239, 1814
BstNSI	RCATGY	5 cut(s)	560, 796, 1790, 2098, 2274
BstSCI	CCNGG	2 cut(s)	237, 1812
BstSFI	CTRYAG	5 cut(s)	83, 372, 407, 1901, 2037
BstUI	CGCG	1 cut(s)	1027
BstV2I	GAAGAC	3 cut(s)	587, 1702, 1889
BstX2I	RGATCY	3 cut(s)	67, 937, 1351
BstXI	CCANNNNNNTGG	1 cut(s)	2296
BstYI	RGATCY	3 cut(s)	67, 937, 1351
Bsu36I	CCTNAGG	1 cut(s)	2050
BsuRI	GGCC	7 cut(s)	726, 956, 1040, 1620, 1773, 1943, 2436
BtsCI	GGATG	5 cut(s)	859, 1198, 1920, 2422, 2437
BtsI	GCAGTG	4 cut(s)	33, 1482, 1656, 2046
BtsIMutI	CAGTG	8 cut(s)	33, 263, 427, 828, 1184, 1482, 1656, 2046
BveI	ACCTGC	2 cut(s)	1236, 1828
CaiI	CAGNNNCTG	1 cut(s)	827
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	5 cut(s)	712, 1027, 1160, 1318, 2154
Cfr10I	RCCGGY	2 cut(s)	2453, 2476
Cfr13I	GGNCC	3 cut(s)	1561, 1817, 1942
CseI	GACGC	3 cut(s)	1460, 1580, 1883
Csp6I	GTAC	6 cut(s)	304, 458, 640, 1225, 1627, 2171
CspAI	ACCGGT	2 cut(s)	2453, 2476
CviQI	GTAC	6 cut(s)	304, 458, 640, 1225, 1627, 2171
DdeI	CTNAG	8 cut(s)	279, 367, 643, 903, 908, 2003, 2050, 2517
DpnI	GATC	9 cut(s)	69, 75, 419, 534, 939, 1119, 1154, 1311, 1353
DpnII	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
DraIII	CACNNNGTG	1 cut(s)	2246
EaeI	YGGCCR	4 cut(s)	724, 1038, 1771, 2434
Eam1104I	CTCTTC	2 cut(s)	1521, 2147
EarI	CTCTTC	2 cut(s)	1521, 2147
Eco130I	CCWWGG	3 cut(s)	1615, 1630, 1945
Eco31I	GGTCTC	2 cut(s)	1578, 1955
Eco47I	GGWCC	2 cut(s)	1561, 1817
Eco47III	AGCGCT	2 cut(s)	1159, 1317
Eco57I	CTGAAG	6 cut(s)	204, 405, 522, 686, 695, 1875
Eco81I	CCTNAGG	1 cut(s)	2050
Eco88I	CYCGRG	2 cut(s)	98, 933
EcoO109I	RGGNCCY	1 cut(s)	1817
EcoRII	CCWGG	2 cut(s)	237, 1812
EcoT14I	CCWWGG	3 cut(s)	1615, 1630, 1945
EcoT22I	ATGCAT	1 cut(s)	1060
ErhI	CCWWGG	3 cut(s)	1615, 1630, 1945
FalI	AAGNNNNNCTT	6 cut(s)	906, 938, 971, 1003, 1449, 1481
FaqI	GGGAC	4 cut(s)	1395, 1830, 1878, 2375
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	1396
FokI	GGATG	5 cut(s)	866, 1205, 1907, 2424, 2429
FspAI	RTGCGCAY	1 cut(s)	2153
FspBI	CTAG	4 cut(s)	801, 1172, 1385, 2593
FspI	TGCGCA	1 cut(s)	2153
GlaI	GCGC	5 cut(s)	711, 1026, 1159, 1317, 2153
HaeII	RGCGCY	2 cut(s)	1161, 1319
HaeIII	GGCC	7 cut(s)	726, 956, 1040, 1620, 1773, 1943, 2436
HapII	CCGG	3 cut(s)	1924, 2454, 2477
HgaI	GACGC	3 cut(s)	1460, 1580, 1883
HhaI	GCGC	5 cut(s)	712, 1027, 1160, 1318, 2154
Hin6I	GCGC	5 cut(s)	710, 1025, 1158, 1316, 2152
HinP1I	GCGC	5 cut(s)	710, 1025, 1158, 1316, 2152
HincII	GTYRAC	3 cut(s)	511, 1198, 2358
HindII	GTYRAC	3 cut(s)	511, 1198, 2358
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	8 cut(s)	1019, 1199, 1435, 1711, 2018, 2194, 2250, 2371
HpaII	CCGG	3 cut(s)	1924, 2454, 2477
HphI	GGTGA	7 cut(s)	341, 527, 1802, 1814, 2223, 2507, 2524
Hpy166II	GTNNAC	6 cut(s)	511, 750, 1198, 1627, 2358, 2365
Hpy8I	GTNNAC	6 cut(s)	511, 750, 1198, 1627, 2358, 2365
HpyAV	CCTTC	8 cut(s)	626, 908, 1775, 1792, 1921, 2147, 2543, 2551
HpyCH4III	ACNGT	4 cut(s)	329, 1188, 1905, 2362
HpyCH4IV	ACGT	1 cut(s)	1647
HpyF10VI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1940, 2004, 2036, 2087, 2100
HpyF3I	CTNAG	8 cut(s)	279, 367, 643, 903, 908, 2003, 2050, 2517
HpySE526I	ACGT	1 cut(s)	1647
HspAI	GCGC	5 cut(s)	710, 1025, 1158, 1316, 2152
Kpn2I	TCCGGA	1 cut(s)	1923
Kzo9I	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
LmnI	GCTCC	5 cut(s)	43, 215, 1141, 1465, 1939
LweI	GCATC	3 cut(s)	625, 1929, 2119
MaeI	CTAG	4 cut(s)	801, 1172, 1385, 2593
MaeII	ACGT	1 cut(s)	1647
MaeIII	GTNAC	4 cut(s)	329, 440, 1474, 2512
MalI	GATC	9 cut(s)	69, 75, 419, 534, 939, 1119, 1154, 1311, 1353
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
MfeI	CAATTG	1 cut(s)	1285
MflI	RGATCY	3 cut(s)	67, 937, 1351
MlsI	TGGCCA	2 cut(s)	726, 2436
MluNI	TGGCCA	2 cut(s)	726, 2436
MlyI	GAGTC	3 cut(s)	1193, 1705, 2188
MmeI	TCCRAC	1 cut(s)	2238
Mox20I	TGGCCA	2 cut(s)	726, 2436
Mph1103I	ATGCAT	1 cut(s)	1060
MroI	TCCGGA	1 cut(s)	1923
MscI	TGGCCA	2 cut(s)	726, 2436
MseI	TTAA	7 cut(s)	540, 576, 894, 1053, 1446, 1680, 1994
MslI	CAYNNNNRTG	5 cut(s)	354, 1236, 1305, 2258, 2336
Msp20I	TGGCCA	2 cut(s)	726, 2436
MspA1I	CMGCKG	2 cut(s)	1432, 2492
MspI	CCGG	3 cut(s)	1924, 2454, 2477
MspR9I	CCNGG	2 cut(s)	239, 1814
MunI	CAATTG	1 cut(s)	1285
Mva1269I	GAATGC	1 cut(s)	1058
MvaI	CCWGG	2 cut(s)	239, 1814
MvnI	CGCG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1940, 2004, 2036, 2087, 2100
NdeI	CATATG	1 cut(s)	1396
NdeII	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
NlaIV	GGNNCC	4 cut(s)	1261, 1516, 1818, 2071
NmeAIII	GCCGAG	2 cut(s)	58, 1749
NmuCI	GTSAC	3 cut(s)	329, 440, 2512
NsbI	TGCGCA	1 cut(s)	2153
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	5 cut(s)	560, 796, 1790, 2098, 2274
PaeI	GCATGC	1 cut(s)	2098
PaeR7I	CTCGAG	2 cut(s)	98, 933
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	1786
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PctI	GAATGC	1 cut(s)	1058
PfeI	GAWTC	5 cut(s)	1019, 1435, 2018, 2250, 2371
PflFI	GACNNNGTC	1 cut(s)	271
PinAI	ACCGGT	2 cut(s)	2453, 2476
PleI	GAGTC	3 cut(s)	1193, 1705, 2188
PpsI	GAGTC	3 cut(s)	1193, 1705, 2188
PpuMI	RGGWCCY	1 cut(s)	1817
PscI	ACATGT	1 cut(s)	1786
PshBI	ATTAAT	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	1647
Psp5II	RGGWCCY	1 cut(s)	1817
Psp6I	CCWGG	2 cut(s)	237, 1812
PspGI	CCWGG	2 cut(s)	237, 1812
PspN4I	GGNNCC	4 cut(s)	1261, 1516, 1818, 2071
PspPI	GGNCC	3 cut(s)	1561, 1817, 1942
PspPPI	RGGWCCY	1 cut(s)	1817
PstI	CTGCAG	4 cut(s)	87, 376, 411, 2041
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	3 cut(s)	67, 937, 1351
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	1432, 2492
RsaI	GTAC	6 cut(s)	305, 459, 641, 1226, 1628, 2172
RsaNI	GTAC	6 cut(s)	304, 458, 640, 1225, 1627, 2171
RseI	CAYNNNNRTG	5 cut(s)	354, 1236, 1305, 2258, 2336
SaqAI	TTAA	7 cut(s)	540, 576, 894, 1053, 1446, 1680, 1994
Sau3AI	GATC	9 cut(s)	67, 73, 417, 532, 937, 1117, 1152, 1309, 1351
Sau96I	GGNCC	3 cut(s)	1561, 1817, 1942
SchI	GAGTC	3 cut(s)	1193, 1705, 2188
ScrFI	CCNGG	2 cut(s)	239, 1814
SfaNI	GCATC	3 cut(s)	625, 1929, 2119
SfcI	CTRYAG	5 cut(s)	83, 372, 407, 1901, 2037
Sfr274I	CTCGAG	2 cut(s)	98, 933
SinI	GGWCC	2 cut(s)	1561, 1817
SlaI	CTCGAG	2 cut(s)	98, 933
SmiMI	CAYNNNNRTG	5 cut(s)	354, 1236, 1305, 2258, 2336
SmlI	CTYRAG	7 cut(s)	98, 933, 941, 1536, 1662, 1751, 2160
SmoI	CTYRAG	7 cut(s)	98, 933, 941, 1536, 1662, 1751, 2160
SphI	GCATGC	1 cut(s)	2098
SsiI	CCGC	6 cut(s)	14, 289, 506, 1290, 1363, 2218
SspMI	CTAG	4 cut(s)	801, 1172, 1385, 2593
StyD4I	CCNGG	2 cut(s)	237, 1812
StyI	CCWWGG	3 cut(s)	1615, 1630, 1945
TaaI	ACNGT	4 cut(s)	329, 1188, 1905, 2362
TaiI	ACGT	1 cut(s)	1650
TaqI	TCGA	4 cut(s)	99, 934, 2192, 2398
TaqII	GACCGA	1 cut(s)	1578
TatI	WGTACW	2 cut(s)	303, 2170
TfiI	GAWTC	5 cut(s)	1019, 1435, 2018, 2250, 2371
Tru1I	TTAA	7 cut(s)	540, 576, 894, 1053, 1446, 1680, 1994
Tru9I	TTAA	7 cut(s)	540, 576, 894, 1053, 1446, 1680, 1994
TscAI	CASTG	8 cut(s)	33, 270, 427, 828, 1191, 1489, 1663, 2046
TseFI	GTSAC	3 cut(s)	329, 440, 2512
Tsp45I	GTSAC	3 cut(s)	329, 440, 2512
TspDTI	ATGAA	9 cut(s)	330, 366, 441, 464, 983, 1498, 1539, 1875, 2297
TspRI	CASTG	8 cut(s)	33, 270, 427, 828, 1191, 1489, 1663, 2046
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	1561, 1817
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	4 cut(s)	117, 571, 1278, 1833
XceI	RCATGY	5 cut(s)	560, 796, 1790, 2098, 2274
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1119, 1253
XhoI	CTCGAG	2 cut(s)	98, 933
XspI	CTAG	4 cut(s)	801, 1172, 1385, 2593
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.