Rorug04G0151500

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
26489743 .. 26491768
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0151500.1

Sequence Viewer

Length: 1512 bp
ATGGATTTCTTGAGCTGTATAGTACTCCTGTCTTTGTGCTCTCTCTCTTGGTTCTTAATCCAAGCCCTCCAGAGGAGAACCAGAGTTAGGCTTCCACCAGGACCAAAGCCATTTCCATTGATTGGTAATCTTTTTGAAGTTGGAGACAAACCTCATCTCTCTTTCACCAAGCTTTCACAACACTATGGCCCCATAATGTCTTTGAAACTAGGCCAACTAACCACTATTGTAGTTTCTTCATCAACCATGGCCAAAGAAATCCTTCAAACACATGATCAATTGTTTTGCAACCGAACAATCCTAGATGCGATGCGAGCAGCGGCAGACAGCTTGCCCTTTATGCCAGTATCACCAAGGTGGAGAAAGCTTCGCAAAATATGCAGCTCCCAATTGTTTGCCACCAAAGTTCTTGATGCCAACCAAGCAAATCGGCAAGTGAAAGTGCAAGAGCTCGTAGATAGTGTCAATGAGAGCATGGTACATGGTGTGGCAGTAGATATTAGAGAGGCTGCTTTTGAAACTACCCTCAATTTGCTGTCAAGGACTTTTTACTCTTTCGATTTGGCTGCTACTGCAAGTAGTAGTAGTGAGATGGCCAGAGAGTACAAGGAGATCGTTTGGGGCTTAGGGGAAGAGGCTGGGAAACCGAATTTGGGGGACTATTTTCCAGTGCTTAGGAAGCTTGACCCGCAAGGCATAAGGCGGCGCTTTACGAATCACTACAACAGGATTTTAGGCTTCACTGAATCTGTGATTGATCAAAGGTTGGAATCTAGAAAAGGAGATGATTATGTCACAACTAACGATATGTTAGATTCTGTTATAAGCATCAGTGAAGAGAAAAATGAGGAGGATATGAACAAACCCCAAGTTATTGAGCACTTGTTTATGGCTCTATTTACTGCGGGCACAGACACAACTTCAGACACATTGGAATGGGCAATGGCTGAGTTACTACATAACCCAGAAAGCCTCTTGAAAGCTCAAGATGAGCTGGATAGTGTGCTTGGGAAGGGAAAATTAATTCAGGAGTCAGACATTACTCAACTACCTTACTTACAAGCAATAATCAAAGAAACATTCCGGTTACACCCAGCAGTCCCATTCCTAGTGCCACGAAAAGCAGAATCAGATGTAGAAATCGGAGGGTACATTGTCCCAAAGAATGCGCAAGTTCTAGTTAATGCTTGGGCCATAGGCAGAGACCCTAGCATTTGGGACAACCCAAACTCTTTTATGCCGGAGAGGTTCTTAGGATTGGAGAACCAAATTGATGTTATGAGAAGAAACTTTGATCTTATTCCATTTGGTGGTGGAAGAAGAATATGTCCTGGACTACCACTGGCAATGAGAATGTTACACTTGATGTTGGGTTCACTCATTAATTGCTTCAATTGGAAACTTGAAGATGGAGTTATATCTGAGACTATGAACATGGAAGACAAGTTTGGCCTCACTTTAAAAATGGCTCAGCCACTTCGAGTTGTGCCCATGCCATTAAGTTATAATTGA

Protein Analysis

503

Amino Acids

56.81

Weight (kDa)

5.94

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 485 1.1e-100 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010697)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 824, 1506
Acc16I TGCGCA 1 cut(s) 1170
AccB7I CCANNNNNTGG 2 cut(s) 122, 1310
AciI CCGC 4 cut(s) 320, 689, 703, 905
AcoI YGGCCR 2 cut(s) 249, 594
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 906
AfaI GTAC 4 cut(s) 24, 480, 605, 1151
AfiI CCNNNNNNNGG 5 cut(s) 72, 87, 122, 653, 1310
AgsI TTSAA 7 cut(s) 137, 205, 266, 518, 979, 1393, 1406
AjnI CCWGG 2 cut(s) 97, 1330
AjuI GAANNNNNNNTTGG 4 cut(s) 635, 667, 1431, 1463
AleI CACNNNNGTG 1 cut(s) 355
AluBI AGCT 9 cut(s) 15, 172, 330, 367, 384, 451, 682, 983, 994
AluI AGCT 9 cut(s) 15, 172, 330, 367, 384, 451, 682, 983, 994
Alw21I GWGCWC 3 cut(s) 41, 453, 882
Alw26I GTCTC 3 cut(s) 138, 1197, 1418
AoxI GGCC 6 cut(s) 187, 211, 249, 594, 1191, 1450
ApeKI GCWGC 4 cut(s) 317, 381, 509, 566
ApoI RAATTY 1 cut(s) 649
AseI ATTAAT 2 cut(s) 1022, 1383
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 708, 1171
AspS9I GGNCC 3 cut(s) 101, 188, 1191
AsuHPI GGTGA 2 cut(s) 157, 342
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 911, 1491
BalI TGGCCA 2 cut(s) 251, 596
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 1446
Bbv12I GWGCWC 3 cut(s) 41, 453, 882
BbvI GCAGC 4 cut(s) 329, 393, 496, 553
BccI CCATC 2 cut(s) 586, 1403
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 99, 1332
BclI TGATCA 2 cut(s) 274, 757
BcoDI GTCTC 3 cut(s) 138, 1197, 1418
BfaI CTAG 6 cut(s) 209, 302, 774, 1109, 1178, 1209
BfoI RGCGCY 1 cut(s) 709
BisI GCNGC 6 cut(s) 318, 321, 382, 510, 567, 704
BlpI GCTNAGC 1 cut(s) 1470
BlsI GCNGC 6 cut(s) 319, 322, 383, 511, 568, 705
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 99, 1332
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 101, 188, 1191
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 99, 1332
BmsI GCATC 4 cut(s) 295, 300, 403, 837
BpiI GAAGAC 1 cut(s) 1446
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 2 cut(s) 625, 674
Bpu1102I GCTNAGC 1 cut(s) 1470
BpuEI CTTGAG 2 cut(s) 31, 969
BsaI GGTCTC 1 cut(s) 1197
BsaJI CCNNGG 2 cut(s) 246, 353
BsaWI WCCGGW 1 cut(s) 1083
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 87, 122, 653, 1310
Bse1I ACTGG 3 cut(s) 344, 668, 1347
Bse3DI GCAATG 2 cut(s) 948, 1353
BseBI CCWGG 2 cut(s) 99, 1332
BseDI CCNNGG 2 cut(s) 246, 353
BseLI CCNNNNNNNGG 5 cut(s) 72, 87, 122, 653, 1310
BseMI GCAATG 2 cut(s) 948, 1353
BseMII CTCAG 3 cut(s) 939, 1413, 1484
BseNI ACTGG 3 cut(s) 344, 668, 1347
BseRI GAGGAG 2 cut(s) 88, 863
BseSI GKGCMC 2 cut(s) 911, 1491
BseXI GCAGC 4 cut(s) 329, 393, 496, 553
BseYI CCCAGC 2 cut(s) 638, 1093
BshFI GGCC 6 cut(s) 189, 213, 251, 596, 1193, 1452
BsiHKAI GWGCWC 3 cut(s) 41, 453, 882
BsiSI CCGG 2 cut(s) 1084, 1241
BslFI GGGAC 4 cut(s) 671, 1085, 1142, 1232
BslI CCNNNNNNNGG 5 cut(s) 72, 87, 122, 653, 1310
BsmAI GTCTC 3 cut(s) 138, 1197, 1418
BsmFI GGGAC 4 cut(s) 671, 1085, 1142, 1232
BsmI GAATGC 1 cut(s) 1171
BsnI GGCC 6 cut(s) 189, 213, 251, 596, 1193, 1452
Bso31I GGTCTC 1 cut(s) 1197
Bsp1286I GDGCHC 5 cut(s) 41, 453, 882, 911, 1491
Bsp143I GATC 4 cut(s) 274, 612, 757, 1294
Bsp1720I GCTNAGC 1 cut(s) 1470
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 4 cut(s) 320, 689, 703, 905
BspANI GGCC 6 cut(s) 189, 213, 251, 596, 1193, 1452
BspCNI CTCAG 3 cut(s) 940, 1414, 1483
BspLI GGNNCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 1197
BsrDI GCAATG 2 cut(s) 948, 1353
BsrI ACTGG 3 cut(s) 344, 668, 1347
BssECI CCNNGG 2 cut(s) 246, 353
BssMI GATC 4 cut(s) 274, 612, 757, 1294
BssT1I CCWWGG 2 cut(s) 246, 353
Bst2UI CCWGG 2 cut(s) 99, 1332
Bst6I CTCTTC 2 cut(s) 627, 831
BstAPI GCANNNNNTGC 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 315, 332, 907
BstDEI CTNAG 6 cut(s) 625, 674, 948, 1252, 1422, 1470
BstDSI CCRYGG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 2 cut(s) 708, 1171
BstKTI GATC 4 cut(s) 277, 615, 760, 1297
BstMAI GTCTC 3 cut(s) 138, 1197, 1418
BstMBI GATC 4 cut(s) 274, 612, 757, 1294
BstMWI GCNNNNNNNGC 7 cut(s) 314, 340, 378, 422, 572, 679, 688
BstNI CCWGG 2 cut(s) 99, 1332
BstSCI CCNGG 2 cut(s) 97, 1330
BstSLI GKGCMC 2 cut(s) 911, 1491
BstV1I GCAGC 4 cut(s) 329, 393, 496, 553
BstV2I GAAGAC 1 cut(s) 1446
BsuRI GGCC 6 cut(s) 189, 213, 251, 596, 1193, 1452
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 323
BtsIMutI CAGTG 4 cut(s) 675, 741, 838, 1340
Cac8I GCNNGC 3 cut(s) 315, 332, 907
CfoI GCGC 2 cut(s) 708, 1171
Cfr13I GGNCC 3 cut(s) 101, 188, 1191
Csp6I GTAC 4 cut(s) 23, 479, 604, 1150
CviAII CATG 6 cut(s) 247, 272, 475, 482, 1435, 1492
CviQI GTAC 4 cut(s) 23, 479, 604, 1150
DdeI CTNAG 6 cut(s) 625, 674, 948, 1252, 1422, 1470
DpnI GATC 4 cut(s) 276, 614, 759, 1296
DpnII GATC 4 cut(s) 274, 612, 757, 1294
DraI TTTAAA 1 cut(s) 1461
EaeI YGGCCR 2 cut(s) 249, 594
Eam1104I CTCTTC 2 cut(s) 627, 831
EarI CTCTTC 2 cut(s) 627, 831
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 246, 353
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 1197
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 97, 1330
EcoT14I CCWWGG 2 cut(s) 246, 353
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 2 cut(s) 246, 353
FaeI CATG 6 cut(s) 250, 275, 478, 485, 1438, 1495
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 4 cut(s) 671, 1085, 1142, 1232
FatI CATG 6 cut(s) 246, 271, 474, 481, 1434, 1491
FauI CCCGC 2 cut(s) 696, 898
FbaI TGATCA 2 cut(s) 274, 757
Fnu4HI GCNGC 6 cut(s) 318, 321, 382, 510, 567, 704
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 6 cut(s) 318, 321, 382, 510, 567, 704
FspBI CTAG 6 cut(s) 209, 302, 774, 1109, 1178, 1209
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 2 cut(s) 707, 1170
GluI GCNGC 6 cut(s) 318, 321, 382, 510, 567, 704
GsaI CCCAGC 2 cut(s) 642, 1097
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 6 cut(s) 189, 213, 251, 596, 1193, 1452
HapII CCGG 2 cut(s) 1084, 1241
HhaI GCGC 2 cut(s) 708, 1171
Hin1II CATG 6 cut(s) 250, 275, 478, 485, 1438, 1495
Hin6I GCGC 2 cut(s) 706, 1169
HinP1I GCGC 2 cut(s) 706, 1169
HindIII AAGCTT 3 cut(s) 170, 365, 680
HinfI GANTC 6 cut(s) 715, 746, 770, 815, 1031, 1127
HpaII CCGG 2 cut(s) 1084, 1241
HphI GGTGA 2 cut(s) 157, 342
Hpy166II GTNNAC 1 cut(s) 1376
Hpy188I TCNGA 5 cut(s) 925, 1036, 1132, 1145, 1423
Hpy188III TCNNGA 7 cut(s) 10, 70, 410, 774, 976, 986, 1028
Hpy8I GTNNAC 1 cut(s) 1376
HpyAV CCTTC 2 cut(s) 272, 1006
HpyCH4V TGCA 4 cut(s) 288, 381, 445, 575
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 340, 378, 422, 572, 679, 688
HpyF3I CTNAG 6 cut(s) 625, 674, 948, 1252, 1422, 1470
Hsp92II CATG 6 cut(s) 250, 275, 478, 485, 1438, 1495
HspAI GCGC 2 cut(s) 706, 1169
Ksp22I TGATCA 2 cut(s) 274, 757
Kzo9I GATC 4 cut(s) 274, 612, 757, 1294
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 4 cut(s) 329, 393, 496, 553
LweI GCATC 4 cut(s) 295, 300, 403, 837
MaeI CTAG 6 cut(s) 209, 302, 774, 1109, 1178, 1209
MaeIII GTNAC 4 cut(s) 793, 951, 1086, 1356
MalI GATC 4 cut(s) 276, 614, 759, 1296
MboI GATC 4 cut(s) 274, 612, 757, 1294
MboII GAAGA 8 cut(s) 228, 644, 848, 1296, 1329, 1332, 1418, 1451
MfeI CAATTG 3 cut(s) 278, 389, 1393
MhlI GDGCHC 5 cut(s) 41, 453, 882, 911, 1491
MlsI TGGCCA 2 cut(s) 251, 596
MluNI TGGCCA 2 cut(s) 251, 596
MlyI GAGTC 1 cut(s) 1040
MmeI TCCRAC 2 cut(s) 121, 747
Mox20I TGGCCA 2 cut(s) 251, 596
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 2 cut(s) 251, 596
MseI TTAA 6 cut(s) 56, 1022, 1182, 1383, 1460, 1499
MslI CAYNNNNRTG 2 cut(s) 355, 934
Msp20I TGGCCA 2 cut(s) 251, 596
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 1084, 1241
MspR9I CCNGG 2 cut(s) 99, 1332
MunI CAATTG 3 cut(s) 278, 389, 1393
Mva1269I GAATGC 1 cut(s) 1171
MvaI CCWGG 2 cut(s) 99, 1332
MwoI GCNNNNNNNGC 7 cut(s) 314, 340, 378, 422, 572, 679, 688
NcoI CCATGG 1 cut(s) 246
NdeII GATC 4 cut(s) 274, 612, 757, 1294
NlaIII CATG 6 cut(s) 250, 275, 478, 485, 1438, 1495
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 793
NsbI TGCGCA 1 cut(s) 1170
OliI CACNNNNGTG 1 cut(s) 355
PctI GAATGC 1 cut(s) 1171
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 715, 746, 770, 815, 1127
PflMI CCANNNNNTGG 2 cut(s) 122, 1310
PfoI TCCNGGA 1 cut(s) 1330
PkrI GCNGC 6 cut(s) 319, 322, 383, 511, 568, 705
PleI GAGTC 1 cut(s) 1039
PpsI GAGTC 1 cut(s) 1039
PshBI ATTAAT 2 cut(s) 1022, 1383
PsiI TTATAA 2 cut(s) 824, 1506
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 97, 1330
PspFI CCCAGC 2 cut(s) 638, 1093
PspGI CCWGG 2 cut(s) 97, 1330
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 3 cut(s) 101, 188, 1191
RsaI GTAC 4 cut(s) 24, 480, 605, 1151
RsaNI GTAC 4 cut(s) 23, 479, 604, 1150
RseI CAYNNNNRTG 2 cut(s) 355, 934
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 6 cut(s) 56, 1022, 1182, 1383, 1460, 1499
SatI GCNGC 6 cut(s) 318, 321, 382, 510, 567, 704
Sau3AI GATC 4 cut(s) 274, 612, 757, 1294
Sau96I GGNCC 3 cut(s) 101, 188, 1191
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 1 cut(s) 1040
ScrFI CCNGG 2 cut(s) 99, 1332
SduI GDGCHC 5 cut(s) 41, 453, 882, 911, 1491
SfaNI GCATC 4 cut(s) 295, 300, 403, 837
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 355, 934
SmlI CTYRAG 2 cut(s) 10, 984
SmoI CTYRAG 2 cut(s) 10, 984
SsiI CCGC 4 cut(s) 320, 689, 703, 905
SspMI CTAG 6 cut(s) 209, 302, 774, 1109, 1178, 1209
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 97, 1330
StyI CCWWGG 2 cut(s) 246, 353
TaqI TCGA 2 cut(s) 558, 1480
TatI WGTACW 2 cut(s) 22, 603
TauI GCSGC 2 cut(s) 323, 706
TfiI GAWTC 5 cut(s) 715, 746, 770, 815, 1127
Tru1I TTAA 6 cut(s) 56, 1022, 1182, 1383, 1460, 1499
Tru9I TTAA 6 cut(s) 56, 1022, 1182, 1383, 1460, 1499
TscAI CASTG 4 cut(s) 675, 748, 838, 1347
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 4 cut(s) 317, 381, 509, 566
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 3 cut(s) 228, 872, 1445
TspRI CASTG 4 cut(s) 675, 748, 838, 1347
Van91I CCANNNNNTGG 2 cut(s) 122, 1310
VpaK11BI GGWCC 1 cut(s) 101
VspI ATTAAT 2 cut(s) 1022, 1383
XapI RAATTY 1 cut(s) 649
XbaI TCTAGA 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 6 cut(s) 209, 302, 774, 1109, 1178, 1209
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.