Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010697

Physical Location & Seq

Genomic Coordinates Reverse (-)

41681728 .. 41683046

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGACGACCGTTGAACCACCAAAAGATCATTGGCTTTTCAAGAATAAGGAGCATGGAAAGATTAGCGCTGCTGGTTGCGGTGTCAAACATGAATGTGATCCCAAACTGGTGATTTTGGGGGAATATGTAGACAAAGAAGATCCATCTATCCATGTTGGTGCAATAATGGGACTAGGGATTGCATATGCTGGTTCGCAGAATGAGCAGATAGGTAGAGAGTTGACTCCAATACTTAATGACACAAAAGCTCCACTTGATGTGGTCACATTCACTGCAATCTCATTGGGGGTTAGCCTTGGCCTTGTGTACCTTGGGAAGCAAGATAATGTTGAAGCCACTGCTCAAGTTTCACAAACTTTTAATGAAAAATTCAGTAGACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCTGGAACAGGAGATGTTCTCAAGGTTCAAACCCTTCTCGGCCATTGTTCGCGACATGTTGAGGAGAAGGGTGAAACTCAGCAGGGACCTGCTGTTCTTGGAATTGCTATGATAGCAATGGCTGAAGAATTGGGACTTACAATGGCAATTCATTCATTAGAGCATCTTCTACAGTATGGACAACAAAGCATCCGGAAGGCAGTTCCTTTGGCCCTTGGTCTCCTTTGCATATCAAAACCAAAGGTCAATGTTATGGACATATTAAGCAGACTTAGCCATGATGCAGATTCAGAAGTAGCAATGGCTGCAGTGGTTTCCTTAGGTTTAATAGGTGCAGGAACCAATAATGCCAGAATAGCTGCCATGTTGCGCAGTCTTTCAAGTTATTACTACAAAGATGCCAACCTTCTCTTCTGTGTGCACATTGCTCAAGGTCTTGCACATTTGGGAAAGGGTTTATCAACTCTAAATCCATATCATTCCGACTGCTTCTTGCTATCACCAGCAGCACTTGGTGGACCCATAGTCATGCTGCACGCATATCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTCCTCTACTATCTTGTTATGGCGGTGCAGCCAAGAATGTTGTTGACCATGGACGAGAATCTCAAACCCTTGTCTGTCCCTGTTCGAATGGGAAAAGATGTTGTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

367

Amino Acids

39.61

Weight (kDa)

6.42

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20580 AT4G28470
fragaria_vesca	FvH4_4g14560
malus_domestica	MD09G1242100.v1.1 MD17G1234500.v1.1
prunus_persica	Prupe.3G134800_v2.0.a1
pyrus_communis	pycom09g16070
rosa_chinensis	RchiOBHm_Chr4g0418261
rosa_laevigata	RLG00000007882 RLG00000014797
rosa_multiflora	Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014
rosa_roxburghii	Rroxscaffold_5G00361020 Rroxscaffold_5G00361440
rosa_rugosa	Rorug04G0151500
rosa_samantha	Rh4BG217500 Rh4CG224800 Rh4DG211700
rosa_wichuraiana	Rw4G018100 Rw6G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	2 cut(s)	129, 376
AccII	CGCG	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	2 cut(s)	78, 1016
AclWI	GGATC	2 cut(s)	92, 134
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	926
AfaI	GTAC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	5 cut(s)	14, 40, 332, 440, 792
AhdI	GACNNNNNGTC	1 cut(s)	935
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	248, 770
AluI	AGCT	2 cut(s)	248, 770
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	635
Alw44I	GTGCAC	1 cut(s)	830
AlwI	GGATC	2 cut(s)	92, 134
Aor13HI	TCCGGA	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	3 cut(s)	298, 451, 621
ApaLI	GTGCAC	1 cut(s)	830
ApeKI	GCWGC	6 cut(s)	68, 716, 770, 917, 943, 1021
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	68, 783
AspS9I	GGNCC	3 cut(s)	497, 622, 929
AsuHPI	GGTGA	3 cut(s)	121, 494, 903
AsuII	TTCGAA	1 cut(s)	1078
AvaII	GGWCC	2 cut(s)	497, 929
AxyI	CCTNAGG	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	6 cut(s)	55, 703, 757, 929, 930, 1033
BccI	CCATC	2 cut(s)	151, 977
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	581, 717
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	6 cut(s)	69, 717, 771, 918, 944, 1022
BlsI	GCNGC	6 cut(s)	70, 718, 772, 919, 945, 1023
Bme18I	GGWCC	2 cut(s)	497, 929
BmeRI	GACNNNNNGTC	1 cut(s)	935
BmgT120I	GGNCC	3 cut(s)	497, 622, 929
BmiI	GGNNCC	3 cut(s)	498, 751, 931
BmsI	GCATC	4 cut(s)	583, 609, 682, 799
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
Bpu14I	TTCGAA	1 cut(s)	1078
BpuEI	CTTGAG	3 cut(s)	327, 416, 825
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	295, 310, 625, 1041
BsaWI	WCCGGW	1 cut(s)	603
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	1 cut(s)	111
Bse21I	CCTNAGG	1 cut(s)	730
Bse3DI	GCAATG	3 cut(s)	534, 717, 834
BseAI	TCCGGA	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	295, 310, 625, 1041
BseGI	GGATG	1 cut(s)	600
BseMI	GCAATG	3 cut(s)	534, 717, 834
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	6 cut(s)	55, 703, 757, 929, 930, 1033
BsgI	GTGCAG	3 cut(s)	765, 929, 1040
Bsh1236I	CGCG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	300, 453, 623
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	604
BslFI	GGGAC	4 cut(s)	183, 510, 558, 1055
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	4 cut(s)	183, 510, 558, 1055
BsnI	GGCC	3 cut(s)	300, 453, 623
Bso31I	GGTCTC	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	1078
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp13I	TCCGGA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	25, 97, 139
Bsp19I	CCATGG	1 cut(s)	1041
Bsp68I	TCGCGA	1 cut(s)	463
BspACI	CCGC	2 cut(s)	78, 1016
BspANI	GGCC	3 cut(s)	300, 453, 623
BspCNI	CTCAG	1 cut(s)	502
BspEI	TCCGGA	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	498, 751, 931
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	92, 134
BspT104I	TTCGAA	1 cut(s)	1078
BspTNI	GGTCTC	1 cut(s)	635
BsrDI	GCAATG	3 cut(s)	534, 717, 834
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	4 cut(s)	295, 310, 625, 1041
BssMI	GATC	3 cut(s)	25, 97, 139
BssT1I	CCWWGG	4 cut(s)	295, 310, 625, 1041
Bst4CI	ACNGT	2 cut(s)	10, 585
Bst6I	CTCTTC	1 cut(s)	827
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	1078
BstC8I	GCNNGC	1 cut(s)	948
BstDEI	CTNAG	3 cut(s)	489, 683, 730
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 783
BstKTI	GATC	3 cut(s)	28, 100, 142
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	3 cut(s)	25, 97, 139
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 524, 684, 716, 767
BstNSI	RCATGY	1 cut(s)	470
BstSFI	CTRYAG	2 cut(s)	581, 717
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	6 cut(s)	55, 703, 757, 929, 930, 1033
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	976
BstYI	RGATCY	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	300, 453, 623
BtgI	CCRYGG	1 cut(s)	1041
BtsCI	GGATG	1 cut(s)	600
BtsI	GCAGTG	3 cut(s)	270, 336, 726
BtsIMutI	CAGTG	3 cut(s)	270, 336, 726
BtuMI	TCGCGA	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	948
CfoI	GCGC	2 cut(s)	68, 783
Cfr13I	GGNCC	3 cut(s)	497, 622, 929
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	8 cut(s)	53, 89, 152, 467, 689, 775, 940, 1042
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	489, 683, 730
DpnI	GATC	3 cut(s)	27, 99, 141
DpnII	GATC	3 cut(s)	25, 97, 139
DraIII	CACNNNGTG	1 cut(s)	926
DriI	GACNNNNNGTC	1 cut(s)	935
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	827
Eam1105I	GACNNNNNGTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	827
Eco130I	CCWWGG	4 cut(s)	295, 310, 625, 1041
Eco31I	GGTCTC	1 cut(s)	635
Eco47I	GGWCC	2 cut(s)	497, 929
Eco47III	AGCGCT	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	497
EcoT14I	CCWWGG	4 cut(s)	295, 310, 625, 1041
ErhI	CCWWGG	4 cut(s)	295, 310, 625, 1041
FaeI	CATG	8 cut(s)	56, 92, 155, 470, 692, 778, 943, 1045
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	4 cut(s)	183, 510, 558, 1055
FatI	CATG	8 cut(s)	52, 88, 151, 466, 688, 774, 939, 1041
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	129, 376
Fnu4HI	GCNGC	6 cut(s)	69, 717, 771, 918, 944, 1022
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	6 cut(s)	69, 717, 771, 918, 944, 1022
FspBI	CTAG	1 cut(s)	173
FspI	TGCGCA	1 cut(s)	782
GlaI	GCGC	2 cut(s)	67, 782
GluI	GCNGC	6 cut(s)	69, 717, 771, 918, 944, 1022
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	300, 453, 623
HapII	CCGG	1 cut(s)	604
HhaI	GCGC	2 cut(s)	68, 783
Hin1II	CATG	8 cut(s)	56, 92, 155, 470, 692, 778, 943, 1045
Hin6I	GCGC	2 cut(s)	66, 781
HinP1I	GCGC	2 cut(s)	66, 781
HincII	GTYRAC	2 cut(s)	222, 1038
HindII	GTYRAC	2 cut(s)	222, 1038
HinfI	GANTC	4 cut(s)	223, 391, 698, 1051
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	3 cut(s)	121, 494, 903
Hpy166II	GTNNAC	7 cut(s)	130, 222, 307, 377, 832, 929, 1038
Hpy188I	TCNGA	2 cut(s)	703, 895
Hpy188III	TCNNGA	4 cut(s)	40, 462, 604, 956
Hpy8I	GTNNAC	7 cut(s)	130, 222, 307, 377, 832, 929, 1038
HpyAV	CCTTC	4 cut(s)	455, 472, 601, 827
HpyCH4III	ACNGT	2 cut(s)	10, 585
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 524, 684, 716, 767
HpyF3I	CTNAG	3 cut(s)	489, 683, 730
Hsp92II	CATG	8 cut(s)	56, 92, 155, 470, 692, 778, 943, 1045
HspAI	GCGC	2 cut(s)	66, 781
Kpn2I	TCCGGA	1 cut(s)	603
Kzo9I	GATC	3 cut(s)	25, 97, 139
LmnI	GCTCC	2 cut(s)	49, 253
Lsp1109I	GCAGC	6 cut(s)	55, 703, 757, 929, 930, 1033
LweI	GCATC	4 cut(s)	583, 609, 682, 799
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	27, 99, 141
MboI	GATC	3 cut(s)	25, 97, 139
MboII	GAAGA	4 cut(s)	149, 548, 569, 814
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	4 cut(s)	368, 513, 539, 558
MlyI	GAGTC	2 cut(s)	217, 385
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	2 cut(s)	466, 1007
MroI	TCCGGA	1 cut(s)	603
MseI	TTAA	4 cut(s)	234, 360, 674, 737
MslI	CAYNNNNRTG	3 cut(s)	93, 156, 938
MspI	CCGG	1 cut(s)	604
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	5 cut(s)	202, 524, 684, 716, 767
NcoI	CCATGG	1 cut(s)	1041
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	25, 97, 139
NlaIII	CATG	8 cut(s)	56, 92, 155, 470, 692, 778, 943, 1045
NlaIV	GGNNCC	3 cut(s)	498, 751, 931
NmeAIII	GCCGAG	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	463
NsbI	TGCGCA	1 cut(s)	782
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	698, 1051
PkrI	GCNGC	6 cut(s)	70, 718, 772, 919, 945, 1023
PleI	GAGTC	2 cut(s)	217, 385
PpsI	GAGTC	2 cut(s)	217, 385
PpuMI	RGGWCCY	1 cut(s)	497
PscI	ACATGT	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	498, 751, 931
PspPI	GGNCC	3 cut(s)	497, 622, 929
PspPPI	RGGWCCY	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	463
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	3 cut(s)	93, 156, 938
SaqAI	TTAA	4 cut(s)	234, 360, 674, 737
SatI	GCNGC	6 cut(s)	69, 717, 771, 918, 944, 1022
Sau3AI	GATC	3 cut(s)	25, 97, 139
Sau96I	GGNCC	3 cut(s)	497, 622, 929
SchI	GAGTC	2 cut(s)	217, 385
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	4 cut(s)	583, 609, 682, 799
SfcI	CTRYAG	2 cut(s)	581, 717
SfuI	TTCGAA	1 cut(s)	1078
SinI	GGWCC	2 cut(s)	497, 929
SmiMI	CAYNNNNRTG	3 cut(s)	93, 156, 938
SmlI	CTYRAG	3 cut(s)	342, 431, 840
SmoI	CTYRAG	3 cut(s)	342, 431, 840
Sse9I	AATT	4 cut(s)	368, 513, 539, 558
SsiI	CCGC	2 cut(s)	78, 1016
SspMI	CTAG	1 cut(s)	173
StyI	CCWWGG	4 cut(s)	295, 310, 625, 1041
TaaI	ACNGT	2 cut(s)	10, 585
TaqI	TCGA	1 cut(s)	1078
TasI	AATT	4 cut(s)	368, 513, 539, 558
TfiI	GAWTC	2 cut(s)	698, 1051
Tru1I	TTAA	4 cut(s)	234, 360, 674, 737
Tru9I	TTAA	4 cut(s)	234, 360, 674, 737
TscAI	CASTG	3 cut(s)	277, 343, 726
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	6 cut(s)	68, 716, 770, 917, 943, 1021
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	105, 378, 551, 555, 977
TspRI	CASTG	3 cut(s)	277, 343, 726
VneI	GTGCAC	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	497, 929
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmiI	GTMKAC	2 cut(s)	129, 376
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.