RLG00000014797

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010697
Physical Location & Seq
Reverse (-)
57628678 .. 57630327
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014797

Sequence Viewer

Length: 330 bp
ATGTCTAATTCCGGGTACTCTAGCAAAGTGAAAGATAACGATTTAGTTGTCAATCCTTCAGGTACATCCAGCTTTAGTCTAACATTGCTAACAAGACTTGTGCTGCTTCTGATTTTATGCAGGGATGTTAATGAACTGGACCTTATTGCTTACAAAGTAAAAATAAATCAAGGAGTCCACATGACATCTTCTTCTAGTAGCTTGAGTACCCCCTCAATATGCAGTAACCTTAAATCACACCTCTACTTCACCTACAGTTCAGCCTTGGATCCACATTCCGCATATATACTGGTGGTTAAACTGAGTATTACCAGCAGTGTTCGGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.84

Weight (kDa)

9.0

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20580 AT4G28470
fragaria_vesca FvH4_4g14560
malus_domestica MD09G1242100.v1.1 MD17G1234500.v1.1
prunus_persica Prupe.3G134800_v2.0.a1
pyrus_communis pycom09g16070
rosa_chinensis RchiOBHm_Chr4g0418261
rosa_laevigata RLG00000007882 RLG00000014797
rosa_multiflora Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014
rosa_roxburghii Rroxscaffold_5G00361020 Rroxscaffold_5G00361440
rosa_rugosa Rorug04G0151500
rosa_samantha Rh4BG217500 Rh4CG224800 Rh4DG211700
rosa_wichuraiana Rw4G018100 Rw6G006980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 263, 276
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 3 cut(s) 17, 64, 208
AluBI AGCT 2 cut(s) 72, 201
AluI AGCT 2 cut(s) 72, 201
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 139, 324
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 13
BfaI CTAG 3 cut(s) 21, 195, 328
BfmI CTRYAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 139, 324
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 141, 294
Bse3DI GCAATG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 65, 130
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 141, 294
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 12
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 2 cut(s) 263, 276
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 141, 294
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 302
BstF5I GGATG 2 cut(s) 65, 130
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 65, 130
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 139, 324
Csp6I GTAC 3 cut(s) 16, 63, 207
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 72, 201, 263, 325
CviKI_1 RGCY 4 cut(s) 72, 201, 263, 325
CviQI GTAC 3 cut(s) 16, 63, 207
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 184
FaiI YATR 6 cut(s) 118, 182, 220, 283, 285, 287
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 2 cut(s) 52, 137
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 3 cut(s) 21, 195, 328
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 184
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 120, 222
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 7 cut(s) 25, 45, 82, 106, 122, 275, 325
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 3 cut(s) 21, 195, 328
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 180, 183
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 2 cut(s) 223, 251
MseI TTAA 3 cut(s) 129, 231, 297
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 13
NciI CCSGG 1 cut(s) 13
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 139, 324
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 3 cut(s) 17, 64, 208
RsaNI GTAC 3 cut(s) 16, 63, 207
SaqAI TTAA 3 cut(s) 129, 231, 297
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 139, 324
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 13
SetI ASST 7 cut(s) 64, 74, 144, 203, 231, 243, 254
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 21, 195, 328
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 257
TasI AATT 1 cut(s) 7
Tru1I TTAA 3 cut(s) 129, 231, 297
Tru9I TTAA 3 cut(s) 129, 231, 297
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 139
XspI CTAG 3 cut(s) 21, 195, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.