Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010697

Physical Location & Seq

Genomic Coordinates Forward (+)

11149588 .. 11158381

Gene Structure 8794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGACATTATCAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGCTATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATTTACAAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCTAGACAGAACTTAGCTGATACGTTTGTTAATGCATTTGTCAATGCTGGCTTTGGTCAGGTAAAGTTATTCAGAATTGATTTGCCTGTGAAATGTTGTGGATTTTGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

97

Amino Acids

10.66

Weight (kDa)

4.73

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	4 - 47	6.4e-13	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20580 AT4G28470
fragaria_vesca	FvH4_4g14560
malus_domestica	MD09G1242100.v1.1 MD17G1234500.v1.1
prunus_persica	Prupe.3G134800_v2.0.a1
pyrus_communis	pycom09g16070
rosa_chinensis	RchiOBHm_Chr4g0418261
rosa_laevigata	RLG00000007882 RLG00000014797
rosa_multiflora	Rmu_co8313613.1_g000001 Rmu_sc0000032.1_g000014
rosa_roxburghii	Rroxscaffold_5G00361020 Rroxscaffold_5G00361440
rosa_rugosa	Rorug04G0151500
rosa_samantha	Rh4BG217500 Rh4CG224800 Rh4DG211700
rosa_wichuraiana	Rw4G018100 Rw6G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	148
AluBI	AGCT	2 cut(s)	182, 197
AluI	AGCT	2 cut(s)	182, 197
AoxI	GGCC	2 cut(s)	105, 148
AsuC2I	CCSGG	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BauI	CACGAG	1 cut(s)	84
BccI	CCATC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	168, 183
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	107, 150
BsiSI	CCGG	1 cut(s)	151
BsnI	GGCC	2 cut(s)	107, 150
BspANI	GGCC	2 cut(s)	107, 150
BspCNI	CTCAG	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	29
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	59, 193
BstSCI	CCNGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	107, 150
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	229
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	107, 150, 182, 197, 231
CviKI_1	RGCY	5 cut(s)	107, 150, 182, 197, 231
DdeI	CTNAG	2 cut(s)	59, 193
EaeI	YGGCCR	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 122, 154
FatI	CATG	1 cut(s)	99
FspBI	CTAG	2 cut(s)	168, 183
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	107, 150
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	8, 34, 215
HpyF3I	CTNAG	2 cut(s)	59, 193
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	20, 129, 147, 164, 213, 224, 279
MaeI	CTAG	2 cut(s)	168, 183
MaeII	ACGT	1 cut(s)	203
MboII	GAAGA	3 cut(s)	23, 29, 131
MluCI	AATT	1 cut(s)	255
MnlI	CCTC	2 cut(s)	88, 97
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	2 cut(s)	210, 292
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	152
NlaIII	CATG	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	210, 292
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	6 cut(s)	70, 99, 184, 199, 206, 243
Sse9I	AATT	1 cut(s)	255
SspMI	CTAG	2 cut(s)	168, 183
StyD4I	CCNGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	206
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	210, 292
Tru9I	TTAA	2 cut(s)	210, 292
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	67
XspI	CTAG	2 cut(s)	168, 183
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.