Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

18530145 .. 18530938

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCCGTTTTCAGGGATGCTATACATGATTGCCTCGATTACGATCACAAATCAGCCCTGAAGACGGCTAAGTTGAAGAAGCAGTTGCTAACTCCTTCGAAGCTCAAGGATTGGTTTTCAGACATACGTTTTGTTCGGTTACCCAACATAAAGAACTATCTGGTTGGGGAAACTCTTCCAGGATGTTGGGCAACTGTTGGAGTGTTGACTGAGAAGGGGACTAAAAGAACTAGTTCTACAGGGAAGAGCTATGCGATATACAAATTCGGGTGTTTGGATGAAGATACTGTTTCTGTTTTCCTGTTTGGTGATATTACCTACAACAAGAGTATATATGCCATTGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

9.13

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	24 - 105	5e-30	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	12, 64
AgsI	TTSAA	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	103, 249
AluI	AGCT	2 cut(s)	103, 249
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
Asp700I	GAANNNNTTC	2 cut(s)	174, 232
AsuHPI	GGTGA	1 cut(s)	320
AsuII	TTCGAA	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	180
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 64
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	22, 188, 283
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	12, 64
BseMII	CTCAG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	12, 64
BsmFI	GGGAC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	98
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	196, 289
Bst6I	CTCTTC	2 cut(s)	180, 239
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	69, 210
BstEII	GGTNACC	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	22, 188, 283
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	22, 188, 283
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	4 cut(s)	56, 68, 103, 249
CviKI_1	RGCY	4 cut(s)	56, 68, 103, 249
DdeI	CTNAG	2 cut(s)	69, 210
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	180, 239
EarI	CTCTTC	2 cut(s)	180, 239
Eco57I	CTGAAG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	29
FaiI	YATR	9 cut(s)	23, 27, 125, 149, 252, 259, 332, 334, 336
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	25
FokI	GGATG	3 cut(s)	29, 195, 290
FspBI	CTAG	1 cut(s)	231
Hin1II	CATG	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	105, 208
HpyCH4III	ACNGT	2 cut(s)	196, 289
HpyCH4IV	ACGT	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	69, 210
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	71, 146, 165, 192, 225, 314
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	5 cut(s)	73, 88, 167, 256, 293
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	1 cut(s)	44
MroXI	GAANNNNTTC	2 cut(s)	174, 232
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	2 cut(s)	174, 232
PfoI	TCCNGGA	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	178
PspEI	GGTNACC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	178
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
SapI	GCTCTTC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	4 cut(s)	105, 130, 251, 320
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	196, 289
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	36, 98
TasI	AATT	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	294
XapI	RAATTY	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	174, 232
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.