RLG00000030779

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016817
Physical Location & Seq
Forward (+)
67354713 .. 67355291
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030779

Sequence Viewer

Length: 327 bp
ATGTTGCTGGAACAGACCAACCAAAATGGTGGGAAAGAAGTGTTCCGAAGTGCTTTATGTCAAGCTGGAGATATAGATAAACAAGGATTTGGCAAGGCCATAGTAGACGTAAAGAAAGTGTCGGACCAATTTGATGATTTGCTCAATGCCGACAACATAATTTTCAAAAATGCTAGATGCAAGGTGCTTTTTAGTGATAACTTTTTGAAGTTATTCAAGAAACTGATATCGGCCTGTTTGGAGAAGTCAGCACTCAGCAGTAAATCTTCTACGAAAGCTTTCATGTGGCTAGGGACCCAAGAAGCGCAGTGTAGAGAGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase UvrD_C

Protein Analysis

109

Amino Acids

12.07

Weight (kDa)

8.95

Isoelectric Point (pI)

15.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AgsI TTSAA 3 cut(s) 166, 208, 217
AluBI AGCT 2 cut(s) 65, 278
AluI AGCT 2 cut(s) 65, 278
AoxI GGCC 2 cut(s) 96, 231
Asp700I GAANNNNTTC 2 cut(s) 212, 278
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 124, 294
AvaII GGWCC 2 cut(s) 124, 294
BfaI CTAG 2 cut(s) 174, 290
Bme18I GGWCC 2 cut(s) 124, 294
BmgT120I GGNCC 2 cut(s) 124, 294
BmiI GGNNCC 2 cut(s) 295, 296
BmsI GCATC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 268
BshFI GGCC 2 cut(s) 98, 233
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 2 cut(s) 98, 233
BspANI GGCC 2 cut(s) 98, 233
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 295, 296
BstDEI CTNAG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 98, 233
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 124, 294
CviAII CATG 1 cut(s) 283
CviJI RGCY 5 cut(s) 65, 98, 233, 278, 289
CviKI_1 RGCY 5 cut(s) 65, 98, 233, 278, 289
DdeI CTNAG 1 cut(s) 254
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 124, 294
EcoO109I RGGNCCY 1 cut(s) 294
EcoRV GATATC 1 cut(s) 228
FaeI CATG 1 cut(s) 286
FaiI YATR 5 cut(s) 58, 74, 101, 158, 284
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 282
FblI GTMKAC 1 cut(s) 105
FspBI CTAG 2 cut(s) 174, 290
GlaI GCGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 98, 233
HhaI GCGC 1 cut(s) 307
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 47, 124
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 305
KflI GGGWCCC 1 cut(s) 294
LpnPI CCDG 2 cut(s) 51, 247
LweI GCATC 1 cut(s) 167
MaeI CTAG 2 cut(s) 174, 290
MaeII ACGT 1 cut(s) 108
MboII GAAGA 1 cut(s) 258
MluCI AATT 2 cut(s) 128, 159
MmeI TCCRAC 1 cut(s) 102
MroXI GAANNNNTTC 2 cut(s) 212, 278
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 2 cut(s) 295, 296
PdmI GAANNNNTTC 2 cut(s) 212, 278
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 295, 296
PspPI GGNCC 2 cut(s) 124, 294
PspPPI RGGWCCY 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 124, 294
SetI ASST 4 cut(s) 67, 111, 186, 280
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 2 cut(s) 124, 294
Sse9I AATT 2 cut(s) 128, 159
SspMI CTAG 2 cut(s) 174, 290
TaiI ACGT 1 cut(s) 111
TasI AATT 2 cut(s) 128, 159
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 271
TspRI CASTG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 124, 294
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 2 cut(s) 212, 278
XspI CTAG 2 cut(s) 174, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.