Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

28136379 .. 28141655

Gene Structure 5277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACGAGAAGATCGAGGAGGACGAAGATGGAACTGGGGTCAGAACACTAAATTGCCTCGAAATCAGCACAGAAGACCATCAAATCGGTTCCTCCAATGATTCAGAGGTTGAGAAATATTCGGGTTTGCGAATAAGGAAGCAGTTGCTAACTCCTTCAGAGCTCAAGGATCGGTTTTCAGACATCCGTTTTGTTCGGTTACCCAATCTTCATAAAATTCGACCTTTGCATGTGCAAATGTTTGTGATCAGAATTATTCTTAACGAGTTTAAGGGTCAAGTAATTCAGATACCACCTTCAGAAGGGAAGCAAACTAATGGAAGGGAAACTCTGGGAGCAAGCAACCCCTATAACTTGGCATTATGTAAGCAAGCAAAACAACTCCTTAACCACCATCAGCAGCCAATTATGAGAACAAAGCTGGTGCATGTAAGAAGAAAAGCCTACTCATTTGGACACCCACATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

9.33

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	39 - 72	1.8e-09	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	2 cut(s)	141, 282
AfiI	CCNNNNNNNGG	1 cut(s)	302
AluBI	AGCT	2 cut(s)	163, 421
AluI	AGCT	2 cut(s)	163, 421
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	216
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	3 cut(s)	23, 87, 402
BclI	TGATCA	1 cut(s)	246
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	12, 169, 246
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	12, 169, 246
BstC8I	GCNNGC	2 cut(s)	340, 372
BstEII	GGTNACC	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	3 cut(s)	15, 172, 249
BstMBI	GATC	3 cut(s)	12, 169, 246
BstNSI	RCATGY	2 cut(s)	233, 431
BstPI	GGTNACC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	340, 372
CviAII	CATG	2 cut(s)	230, 428
CviJI	RGCY	4 cut(s)	163, 403, 421, 443
CviKI_1	RGCY	4 cut(s)	163, 403, 421, 443
DpnI	GATC	3 cut(s)	14, 171, 248
DpnII	GATC	3 cut(s)	12, 169, 246
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	141, 282
Eco91I	GGTNACC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO65I	GGTNACC	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	2 cut(s)	233, 431
FaiI	YATR	7 cut(s)	213, 231, 351, 364, 410, 429, 465
FatI	CATG	2 cut(s)	229, 427
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	233, 431
HinfI	GANTC	1 cut(s)	101
Hpy188I	TCNGA	7 cut(s)	44, 106, 160, 181, 251, 288, 301
HpyAV	CCTTC	4 cut(s)	165, 296, 306, 315
HpyCH4V	TGCA	3 cut(s)	229, 235, 427
Hsp92II	CATG	2 cut(s)	233, 431
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	12, 169, 246
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	3 cut(s)	21, 317, 407
Lsp1109I	GCAGC	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	3 cut(s)	14, 171, 248
MboI	GATC	3 cut(s)	12, 169, 246
MboII	GAAGA	5 cut(s)	22, 38, 86, 200, 447
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	5 cut(s)	52, 216, 252, 282, 405
MnlI	CCTC	5 cut(s)	10, 13, 68, 100, 103
MseI	TTAA	3 cut(s)	261, 270, 387
NdeII	GATC	3 cut(s)	12, 169, 246
NlaIII	CATG	2 cut(s)	233, 431
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	2 cut(s)	233, 431
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 21
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	261, 270, 387
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	12, 169, 246
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	5 cut(s)	111, 165, 226, 298, 423
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	52, 216, 252, 282, 405
SspI	AATATT	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	165
TaqI	TCGA	3 cut(s)	15, 60, 220
TasI	AATT	5 cut(s)	52, 216, 252, 282, 405
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	261, 270, 387
Tru9I	TTAA	3 cut(s)	261, 270, 387
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	2 cut(s)	233, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.