TPR and ankyrin repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05800 FvH4_4g14930 FvH4_7g17270 |
| rosa_chinensis | RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591 |
| rosa_laevigata | RLG00000030779 |
| rosa_multiflora | Rmu_sc0000600.1_g000052 |
| rosa_roxburghii | Rroxscaffold_3G00250050 |
| rosa_samantha | Rh4CG152700 Rh7BG355200 |
| rosa_wichuraiana | Rw4G011880 Rw4G011900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 150 |
| AfaI | GTAC | 1 cut(s) | 169 |
| AgsI | TTSAA | 3 cut(s) | 49, 91, 100 |
| AluBI | AGCT | 1 cut(s) | 188 |
| AluI | AGCT | 1 cut(s) | 188 |
| AoxI | GGCC | 1 cut(s) | 114 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AspLEI | GCGC | 1 cut(s) | 163 |
| AspS9I | GGNCC | 1 cut(s) | 7 |
| AvaII | GGWCC | 1 cut(s) | 7 |
| BfaI | CTAG | 1 cut(s) | 57 |
| Bme18I | GGWCC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 7 |
| BmsI | GCATC | 1 cut(s) | 50 |
| BshFI | GGCC | 1 cut(s) | 116 |
| BsnI | GGCC | 1 cut(s) | 116 |
| Bsp1407I | TGTACA | 1 cut(s) | 167 |
| BspANI | GGCC | 1 cut(s) | 116 |
| BspHI | TCATGA | 1 cut(s) | 16 |
| BsrGI | TGTACA | 1 cut(s) | 167 |
| BstAUI | TGTACA | 1 cut(s) | 167 |
| BstHHI | GCGC | 1 cut(s) | 163 |
| BsuRI | GGCC | 1 cut(s) | 116 |
| BtsI | GCAGTG | 1 cut(s) | 170 |
| BtsIMutI | CAGTG | 1 cut(s) | 170 |
| CciI | TCATGA | 1 cut(s) | 16 |
| CfoI | GCGC | 1 cut(s) | 163 |
| Cfr13I | GGNCC | 1 cut(s) | 7 |
| Csp6I | GTAC | 1 cut(s) | 168 |
| CviAII | CATG | 2 cut(s) | 17, 139 |
| CviJI | RGCY | 3 cut(s) | 116, 145, 188 |
| CviKI_1 | RGCY | 3 cut(s) | 116, 145, 188 |
| CviQI | GTAC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 1 cut(s) | 150 |
| FaeI | CATG | 2 cut(s) | 20, 142 |
| FaiI | YATR | 3 cut(s) | 18, 41, 140 |
| FatI | CATG | 2 cut(s) | 16, 138 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GlaI | GCGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 116 |
| HhaI | GCGC | 1 cut(s) | 163 |
| Hin1II | CATG | 2 cut(s) | 20, 142 |
| Hin6I | GCGC | 1 cut(s) | 161 |
| HinP1I | GCGC | 1 cut(s) | 161 |
| HinfI | GANTC | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 1 cut(s) | 168 |
| Hpy188I | TCNGA | 1 cut(s) | 108 |
| Hpy188III | TCNNGA | 3 cut(s) | 17, 100, 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 1 cut(s) | 63 |
| Hsp92II | CATG | 2 cut(s) | 20, 142 |
| HspAI | GCGC | 1 cut(s) | 161 |
| LpnPI | CCDG | 1 cut(s) | 130 |
| LweI | GCATC | 1 cut(s) | 50 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MboII | GAAGA | 1 cut(s) | 114 |
| MluCI | AATT | 2 cut(s) | 11, 42 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 81 |
| NlaIII | CATG | 2 cut(s) | 20, 142 |
| PagI | TCATGA | 1 cut(s) | 16 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| PspPI | GGNCC | 1 cut(s) | 7 |
| RsaI | GTAC | 1 cut(s) | 169 |
| RsaNI | GTAC | 1 cut(s) | 168 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| Sau96I | GGNCC | 1 cut(s) | 7 |
| SetI | ASST | 2 cut(s) | 69, 190 |
| SfaNI | GCATC | 1 cut(s) | 50 |
| SgeI | CNNG | 7 cut(s) | 29, 69, 76, 112, 129, 151, 167 |
| SinI | GGWCC | 1 cut(s) | 7 |
| Sse9I | AATT | 2 cut(s) | 11, 42 |
| SspMI | CTAG | 1 cut(s) | 57 |
| TasI | AATT | 2 cut(s) | 11, 42 |
| TatI | WGTACW | 1 cut(s) | 167 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TscAI | CASTG | 1 cut(s) | 170 |
| TspDTI | ATGAA | 1 cut(s) | 5 |
| TspRI | CASTG | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 7 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 57 |