Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

28129826 .. 28133546

Gene Structure 3721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAATATGGTCAGAACACTAAACTGCCTCGAAATCGGCACAGAAGACCATCAAATCGGTTCCTCCAATGATTCAGAGGTTGATAAATATTCGGGTTTGCGAATAAGGAAGCAGTTGCTAACTCCTTCAGAGCTCAAGGATCGGTTTTCAGACATCCGTTTTGTTCGGTTGCCCAATCTTCATAAAGGAAGAGCTATTCGATATACAAATTCGAGTGTTTGGAGGAAGATACCGTTTTCTGTTTTCTTGTTTGGTCATGCTTATGAGAGGAACTGCAATGAGCAGGATGGAATGGTGTTTGCACTGTTTAATTGTAGCCTACGCAAGGATGCTAAGGGTGCTGCTTTTTCTTTGAGTGTGTTTTCGGCCAATCAAATTGTGGAGATAGGAACTTCAGTTGATTATGGAGTCTGCAGAGGGAAAAGGAAGGATGGAATGGCTTGTACTTTAGTCATAAATAAGCGCCAAGGAATATATTGTAAATTTCATAGATCGAAAGAATCACAGAAATATTCCACTATGCAAACTGTGCTCAAGGGAGGAAAGCAGATGGCACTTATAACAATGAATATGGACAGCATGGAACAGGGGATACAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

9.59

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	29 - 74	1.4e-09	MCM10 OB-fold
OB_MCM10	PF22379	79 - 127	2.7e-13	MCM10 OB-fold
zf-primase	PF09329	130 - 173	2e-14	Primase zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	208, 482
AcuI	CTGAAG	2 cut(s)	111, 378
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	133, 194
AluI	AGCT	2 cut(s)	133, 194
Alw21I	GWGCWC	2 cut(s)	135, 534
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	208, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	135, 534
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	4 cut(s)	57, 281, 425, 544
BciVI	GTATCC	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	412
BfoI	RGCGCY	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	585
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	119, 518
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	4 cut(s)	153, 292, 334, 436
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	135, 534
BslI	CCNNNNNNNGG	1 cut(s)	325
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	135, 534
Bsp143I	GATC	2 cut(s)	139, 491
BspANI	GGCC	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	139, 491
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	234, 306, 529
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	153, 292, 334, 436
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	142, 494
BstMBI	GATC	2 cut(s)	139, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 529
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	4 cut(s)	153, 292, 334, 436
BtsIMutI	CAGTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	257, 580
CviJI	RGCY	5 cut(s)	133, 194, 318, 368, 440
CviKI_1	RGCY	5 cut(s)	133, 194, 318, 368, 440
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	141, 493
DpnII	GATC	2 cut(s)	139, 491
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	111, 378
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	260, 583
FatI	CATG	2 cut(s)	256, 579
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	4 cut(s)	140, 299, 341, 443
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	342
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	260, 583
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	71, 408, 500
Hpy188I	TCNGA	4 cut(s)	14, 76, 130, 151
HpyAV	CCTTC	2 cut(s)	135, 421
HpyCH4III	ACNGT	3 cut(s)	234, 306, 529
HpyCH4V	TGCA	4 cut(s)	276, 302, 414, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 529
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	260, 583
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	139, 491
LguI	GCTCTTC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	269, 572
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	319
MalI	GATC	2 cut(s)	141, 493
MboI	GATC	2 cut(s)	139, 491
MboII	GAAGA	4 cut(s)	56, 170, 201, 238
MhlI	GDGCHC	2 cut(s)	135, 534
MluCI	AATT	4 cut(s)	208, 310, 375, 482
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	38, 70, 73, 216, 261, 410, 533
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	338, 529
NdeII	GATC	2 cut(s)	139, 491
NlaIII	CATG	2 cut(s)	260, 583
NlaIV	GGNNCC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	71, 500
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	61
PsrI	GAACNNNNNNTAC	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	139, 491
SchI	GAGTC	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	135, 534
SetI	ASST	3 cut(s)	81, 135, 196
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	134, 533
SmoI	CTYRAG	2 cut(s)	134, 533
Sse9I	AATT	4 cut(s)	208, 310, 375, 482
SspI	AATATT	2 cut(s)	89, 512
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	234, 306, 529
TaqI	TCGA	4 cut(s)	30, 199, 212, 494
TasI	AATT	4 cut(s)	208, 310, 375, 482
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	71, 500
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	17, 170, 476, 581
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	2 cut(s)	208, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.