Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

37217008 .. 37218953

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG355200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCAAATGTTCTTGTGTTAGTGCCGTCGGGAGCTCCATGGAAGCAGTTGCTATCTCCTTCAGAGCTTAAGGATCGGTTTTCAGACATCCGTTTTGTTCGGTTACCCAATATAAACTCTCTGGTTATCGATTCTGTTAAGTTGTTGAATTATGGTGAGAAGATTAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

57

Amino Acids

6.48

Weight (kDa)

9.99

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	45
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	2 cut(s)	35, 67
AluI	AGCT	2 cut(s)	35, 67
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsuHPI	GGTGA	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	129
BspPI	GGATC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	129
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	2 cut(s)	35, 67
CviKI_1	RGCY	2 cut(s)	35, 67
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	1 cut(s)	42
FaiI	YATR	3 cut(s)	40, 113, 153
FatI	CATG	1 cut(s)	38
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	64, 85
Hpy188III	TCNNGA	1 cut(s)	30
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	32, 40
LpnPI	CCDG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	148
MseI	TTAA	2 cut(s)	69, 138
MspCI	CTTAAG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	69, 138
Sau3AI	GATC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	2 cut(s)	37, 69
SgeI	CNNG	4 cut(s)	26, 42, 51, 134
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	148
SstI	GAGCTC	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	38
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	69, 138
Tru9I	TTAA	2 cut(s)	69, 138
TspGWI	ACGGA	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.