Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Forward (+)

56726841 .. 56729696

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTTGGACCAATTTCATGAGTTGCCCAATGCCAACAGCATAATTTTCAAAAACGCTAGATGCAAGGTGCTTTTTAGTATTAACTTTTTGAAGTTATTCAAGAATCTGATGTCGGCCTGTTCTTCTACTGAAGCAGTCATGTGGCTAAAGACCCAAGAAGCGCAGTGTACAGAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 AAA_19 UvrD-helicase UvrD_C

Protein Analysis

60

Amino Acids

6.93

Weight (kDa)

8.57

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	49, 91, 100
AoxI	GGCC	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	167
BspANI	GGCC	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	17, 139
CviJI	RGCY	2 cut(s)	116, 145
CviKI_1	RGCY	2 cut(s)	116, 145
CviQI	GTAC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	150
FaeI	CATG	2 cut(s)	20, 142
FaiI	YATR	3 cut(s)	18, 41, 140
FatI	CATG	2 cut(s)	16, 138
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	20, 142
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	17, 100
Hpy8I	GTNNAC	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	20, 142
HspAI	GCGC	1 cut(s)	161
LpnPI	CCDG	1 cut(s)	130
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	57
MboII	GAAGA	1 cut(s)	114
MluCI	AATT	2 cut(s)	11, 42
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	81
NlaIII	CATG	2 cut(s)	20, 142
PagI	TCATGA	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	50
SgeI	CNNG	7 cut(s)	29, 69, 76, 112, 129, 151, 167
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	2 cut(s)	11, 42
SspMI	CTAG	1 cut(s)	57
TasI	AATT	2 cut(s)	11, 42
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.