Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

262693 .. 264223

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggtagacgtaaagaaaatgttggaccaatttcatgagttgcccaatgccaacagcataattttcaaaaacgctagatgcaaggtgctttttagtattaactttttgaagttattcaagaatctgatggtcagaacactaaactgcctcgaaatcagcacagaagaccatcaaatcggttcctccaatgattcagaggttgagaaatattcgggtttgcgaataaggaagcagttgctaactccttcagagctcaaggatcggttttcagacatccgttttgttcggttacccaatcttcataaagatctatctggttggggaaactctttcaggatgttgggcaactgttggagtgttgttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

122

Amino Acids

14.19

Weight (kDa)

9.12

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	67, 109, 118
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	2 cut(s)	121, 177
BfaI	CTAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	273, 342
BsiHKAI	GWGCWC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	259, 307
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	267
BssMI	GATC	2 cut(s)	259, 307
Bst4CI	ACNGT	1 cut(s)	350
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	273, 342
BstKTI	GATC	2 cut(s)	262, 310
BstMBI	GATC	2 cut(s)	259, 307
BstPI	GGTNACC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	273, 342
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	1 cut(s)	253
CviKI_1	RGCY	1 cut(s)	253
DpnI	GATC	2 cut(s)	261, 309
DpnII	GATC	2 cut(s)	259, 307
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	38
FaiI	YATR	3 cut(s)	36, 59, 303
FatI	CATG	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	6
FokI	GGATG	2 cut(s)	260, 349
FriOI	GRGCYC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	38
HinfI	GANTC	2 cut(s)	121, 191
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	5 cut(s)	126, 134, 196, 250, 271
Hpy188III	TCNNGA	3 cut(s)	35, 118, 334
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	259, 307
LpnPI	CCDG	2 cut(s)	300, 319
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	2 cut(s)	261, 309
MboI	GATC	2 cut(s)	259, 307
MboII	GAAGA	2 cut(s)	176, 290
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	29, 60
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	3 cut(s)	158, 190, 193
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	99
NdeII	GATC	2 cut(s)	259, 307
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	121, 191
Psp124BI	GAGCTC	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	259, 307
Sau96I	GGNCC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	4 cut(s)	12, 87, 201, 255
SfaNI	GCATC	1 cut(s)	68
SgeI	CNNG	9 cut(s)	47, 87, 94, 130, 161, 225, 268, 327, 346
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	29, 60
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	29, 60
TfiI	GAWTC	2 cut(s)	121, 191
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	23, 290
TspGWI	ACGGA	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.