Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016817

Physical Location & Seq

Genomic Coordinates Reverse (-)

14701766 .. 14702397

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCCGTTTTCAGGGATGCTGTACAGGACTGCCTCGATTACGATCACAAATCAGCACTGAAGACCGCTAAGTTGAAGCAAAACAGTTCCTCCAATGAATCTGAGGTTGAAAAGTATTCGGGTTTGCGAATAAGGAAGCAGTTGCTAACTCCTTCGAAGCTCAAGGATCGGTTTTCAGACATACGTTTTGTTCGGTTACCCAGCATAAAGAACTACCTGGTTGGGGAAACTCTTCCAGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

82

Amino Acids

9.26

Weight (kDa)

9.43

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	38 - 81	3.8e-12	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05800 FvH4_4g14930 FvH4_7g17270
rosa_chinensis	RchiOBHm_Chr1g0313751 RchiOBHm_Chr2g0115071 RchiOBHm_Chr3g0490401 RchiOBHm_Chr4g0432591
rosa_laevigata	RLG00000030779
rosa_multiflora	Rmu_sc0000600.1_g000052
rosa_roxburghii	Rroxscaffold_3G00250050
rosa_samantha	Rh4CG152700 Rh7BG355200
rosa_wichuraiana	Rw4G011880 Rw4G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	12, 223
AgsI	TTSAA	2 cut(s)	76, 110
AjnI	CCWGG	2 cut(s)	216, 235
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	174
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	218, 237
Bme1390I	CCNGG	2 cut(s)	218, 237
BmrFI	CCNGG	2 cut(s)	218, 237
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 223
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	218, 237
BseGI	GGATG	2 cut(s)	22, 245
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	12, 223
BseMII	CTCAG	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	12, 223
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	43, 166
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	22
BssMI	GATC	2 cut(s)	43, 166
Bst2UI	CCWGG	2 cut(s)	218, 237
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	69, 102
BstEII	GGTNACC	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	22, 245
BstKTI	GATC	2 cut(s)	46, 169
BstMBI	GATC	2 cut(s)	43, 166
BstNI	CCWGG	2 cut(s)	218, 237
BstPI	GGTNACC	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	216, 235
BstV2I	GAAGAC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	22, 245
BtsIMutI	CAGTG	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	23
CviJI	RGCY	1 cut(s)	160
CviKI_1	RGCY	1 cut(s)	160
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	69, 102
DpnI	GATC	2 cut(s)	45, 168
DpnII	GATC	2 cut(s)	43, 166
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	216, 235
FaiI	YATR	2 cut(s)	182, 206
FokI	GGATG	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	103, 178
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	69, 102
HpySE526I	ACGT	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	43, 166
LpnPI	CCDG	5 cut(s)	11, 203, 214, 222, 230
LweI	GCATC	1 cut(s)	7
MabI	ACCWGGT	1 cut(s)	216
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	45, 168
MboI	GATC	2 cut(s)	43, 166
MboII	GAAGA	2 cut(s)	73, 224
MnlI	CCTC	3 cut(s)	44, 97, 100
MroXI	GAANNNNTTC	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	218, 237
MvaI	CCWGG	2 cut(s)	218, 237
NdeII	GATC	2 cut(s)	43, 166
NspV	TTCGAA	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	216, 235
PspEI	GGTNACC	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	2 cut(s)	216, 235
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	43, 166
ScrFI	CCNGG	2 cut(s)	218, 237
SetI	ASST	4 cut(s)	108, 162, 187, 219
SexAI	ACCWGGT	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	155
SgeI	CNNG	8 cut(s)	25, 38, 47, 132, 175, 213, 229, 230
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	216, 235
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	36, 155
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.