Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

19245693 .. 19247349

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTGTGTCTGTTCATCTTGCACCGAAGCTCTTCCCTCTTGTCATTTCCAGGTCAGGGAAGAATAGATTGAGACCCAATAAAGAGTATAAAATGCACTCCATGTGTGCCCTACCTTCTCAAGGAGCTTCATCAACTCGCCGACTTGTAGTATATGGGGGTGCTTCTGTCCTTGCGGTTCTAGCCACAAACTATGGGCTAGCGACATTGCCTGTTTTGGCAGACGACAAGTCGAATGGTGAAGAGGAGAAGTATGGAATTTTTGGTGCTATCCAGTCGCTGCTCGAAGCCAAAACAAAAACAAAGTCTGGAAGAGTGTTGCCGAAGGCATATCTGAAGTCTGCAAAAGAAGTTGTGAAGACGCTGCGGGAATCACTGCAGGAAGATCCCAAGGATAATGCTAAGTTTAGACGGACTGCAGATGCAGCAAAGGAATCTATTCGAGAGTACTTGAGCAATTGGAGGGGACAGCCAACGGTGTCTCAAGAGGAATCTTATGTTGAGTTAGAGAAAGCAATAAGATCACTGGCCGGCTTTTACTCAAAGGCAGGACCTTCTGCCCCATTGCCTGCAGAAGTCAAGTCTGAAATATTGAATGATTTGGATACAGCTGAAGAGTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

209

Amino Acids

22.8

Weight (kDa)

9.28

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	53 - 208	6.8e-46	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	176, 367
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	57, 122
AgsI	TTSAA	1 cut(s)	595
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	3 cut(s)	31, 128, 611
AluI	AGCT	3 cut(s)	31, 128, 611
Alw26I	GTCTC	2 cut(s)	67, 486
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	280, 364, 425
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	3 cut(s)	32, 438, 618
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	267, 351, 437
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	67, 486
BfaI	CTAG	2 cut(s)	182, 200
BfmI	CTRYAG	3 cut(s)	377, 417, 570
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	281, 365, 426
BlsI	GCNGC	3 cut(s)	282, 366, 427
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	551
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	412
BmtI	GCTAGC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	365
BpuEI	CTTGAG	3 cut(s)	105, 468, 472
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 122
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	274, 531
Bse3DI	GCAATG	2 cut(s)	206, 563
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	57, 122
BseMI	GCAATG	2 cut(s)	206, 563
BseNI	ACTGG	2 cut(s)	274, 531
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	267, 351, 437
BshFI	GGCC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	57, 122
BsmAI	GTCTC	2 cut(s)	67, 486
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	530
Bso31I	GGTCTC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	385, 521
BspACI	CCGC	2 cut(s)	176, 367
BspANI	GGCC	1 cut(s)	530
BspMAI	CTGCAG	3 cut(s)	381, 421, 574
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	206, 563
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	274, 531
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	385, 521
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	4 cut(s)	38, 237, 307, 609
BstC8I	GCNNGC	3 cut(s)	201, 532, 570
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	388, 524
BstMAI	GTCTC	2 cut(s)	67, 486
BstMBI	GATC	2 cut(s)	385, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 425
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	3 cut(s)	377, 417, 570
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	267, 351, 437
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	530
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	374, 524
Cac8I	GCNNGC	3 cut(s)	201, 532, 570
CaiI	CAGNNNCTG	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	387, 523
DpnII	GATC	2 cut(s)	385, 521
DriI	GACNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	4 cut(s)	38, 237, 307, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	4 cut(s)	38, 237, 307, 609
Eco130I	CCWWGG	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	106
FaiI	YATR	8 cut(s)	90, 104, 154, 156, 195, 255, 331, 498
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	281, 365, 426
Fsp4HI	GCNGC	3 cut(s)	281, 365, 426
FspBI	CTAG	2 cut(s)	182, 200
GluI	GCNGC	3 cut(s)	281, 365, 426
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	371, 434, 491
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	336, 586
Hpy188III	TCNNGA	3 cut(s)	309, 443, 485
HpyAV	CCTTC	3 cut(s)	126, 319, 564
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	7 cut(s)	23, 97, 344, 379, 419, 425, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 425
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	385, 521
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	3 cut(s)	267, 351, 437
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	182, 200
MalI	GATC	2 cut(s)	387, 523
MboI	GATC	2 cut(s)	385, 521
MboII	GAAGA	7 cut(s)	25, 73, 254, 324, 370, 395, 626
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	258, 457
MnlI	CCTC	4 cut(s)	48, 238, 456, 481
MroNI	GCCGGC	1 cut(s)	530
MroXI	GAANNNNTTC	3 cut(s)	32, 438, 618
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	182, 425
NaeI	GCCGGC	1 cut(s)	532
NdeII	GATC	2 cut(s)	385, 521
NgoMIV	GCCGGC	1 cut(s)	530
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	532
PdmI	GAANNNNTTC	3 cut(s)	32, 438, 618
PfeI	GAWTC	3 cut(s)	371, 434, 491
PkrI	GCNGC	3 cut(s)	282, 366, 427
PpuMI	RGGWCCY	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	3 cut(s)	381, 421, 574
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	3 cut(s)	281, 365, 426
Sau3AI	GATC	2 cut(s)	385, 521
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	33, 56, 118, 130, 556, 613
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	3 cut(s)	377, 417, 570
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	3 cut(s)	120, 451, 483
SmoI	CTYRAG	3 cut(s)	120, 451, 483
Sse9I	AATT	2 cut(s)	258, 457
SsiI	CCGC	2 cut(s)	176, 367
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	182, 200
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	3 cut(s)	233, 285, 442
TasI	AATT	2 cut(s)	258, 457
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	3 cut(s)	371, 434, 491
TscAI	CASTG	2 cut(s)	381, 531
TseI	GCWGC	3 cut(s)	280, 364, 425
TspDTI	ATGAA	2 cut(s)	5, 120
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	2 cut(s)	381, 531
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	258
XmnI	GAANNNNTTC	3 cut(s)	32, 438, 618
XspI	CTAG	2 cut(s)	182, 200
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.