Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

27705690 .. 27708495

Gene Structure 2806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTCAAATGTTCATGCAATTCCCTTTGGCATTTGTCGGTGCTTTCGCTGTGATGATGCTCCTAGTTCATGCCCAGGATGGATCAGACTTCATTAGCATAGATTGTGGCCTACAACAAAATTCGGACTATACAGAAAGCACAACAACCATAAGATACGTTCCAGACACAAATTTCATTGATACTGGTGAGGGCAAGACCGTATCACGTGAGTATAACTTTCAGCAACAGTTTTGGTTCGTTAGGATCTTCCCTAAAGGAACCAGGAATTGTTACAAAATAAACATTAAAAGCGGGCAAAAGTATTTGATTCGAGCAAGCTTTGGGTATGGAAATTATGATGGGGAAAACAATTTACCTGAATTCGAACTGCATCTTGGAGCTAGTTTGTGGGATTCTGTGGTGATTACTAGTGTGAATACTATCATAATCAAGGAGCTCATACATATCCCTATGCGGAATTACATACATGTTTGTTTGGTTGACATAAATAAAGGGGTTCCATTCATATCGACTATAGAACTCAGGTGTTTACGTGACGAAAGTTATCAAACAGAAGTTGGGTCTTTGGCACTTATTAAGCGACAAAACATGGCAGTGAATCAGACCATATACAGGTACCCAAACGATGTTAATGATCGTATCTGGAATCCTGAATTCAGCGTTGATTGGGAAGAATTAAGTACTTCTTCCGTCATCGACACGGATCAAACCCCTTACCAACTCCCATCTGATGTCATGAGTACAGCTGCCACGCCAGCAGATATTTCAAGCAAATATTTAAGTTTTTCCTGGGAGCCTGTCGTCGGTAAAAATGCATCATATTATATATATATGCACTTTGCAGAAGTTGAAGAGATCAGCGCCAGCTGGTCTAGAGAGCTCACTATTACCATGAATGGAGAGCTTATTTCTAAGCCATTTGTTCCACGTTACTTGAACACAACAACGATTAACACCACGATTGCTGCGGAAGGAGGACAGATGTCATCGATAGTGCATGTCATCGATGAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

339

Amino Acids

38.63

Weight (kDa)

4.85

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	34 - 329	1.9e-98	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AciI	CCGC	3 cut(s)	294, 457, 971
AclWI	GGATC	3 cut(s)	91, 254, 714
AcsI	RAATTY	4 cut(s)	121, 172, 362, 656
AcvI	CACGTG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	620, 685, 745
AfeI	AGCGCT	1 cut(s)	1016
AfiI	CCNNNNNNNGG	2 cut(s)	615, 806
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	771, 854, 940
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	3 cut(s)	75, 263, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	7 cut(s)	321, 383, 439, 749, 870, 883, 907
AluI	AGCT	7 cut(s)	321, 383, 439, 749, 870, 883, 907
Alw21I	GWGCWC	2 cut(s)	441, 885
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	91, 254, 714
Aor51HI	AGCGCT	1 cut(s)	1016
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	749, 968
ApoI	RAATTY	4 cut(s)	121, 172, 362, 656
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	866, 1017
AsuHPI	GGTGA	2 cut(s)	200, 415
AsuII	TTCGAA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	2 cut(s)	441, 885
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	441, 885
BbvI	GCAGC	2 cut(s)	736, 955
BccI	CCATC	3 cut(s)	74, 335, 736
BciT130I	CCWGG	3 cut(s)	77, 265, 793
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	4 cut(s)	65, 384, 411, 876
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	2 cut(s)	867, 1018
BisI	GCNGC	2 cut(s)	750, 969
BlsI	GCNGC	2 cut(s)	751, 970
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	3 cut(s)	77, 265, 793
BmiI	GGNNCC	4 cut(s)	262, 501, 620, 798
BmrFI	CCNGG	3 cut(s)	77, 265, 793
BmsI	GCATC	3 cut(s)	48, 382, 827
BoxI	GACNNNNGTC	1 cut(s)	985
Bpu14I	TTCGAA	1 cut(s)	366
Bsa29I	ATCGAT	2 cut(s)	992, 1008
BsaAI	YACGTR	2 cut(s)	209, 536
BsaJI	CCNNGG	2 cut(s)	75, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 806
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	77, 265, 793
BseCI	ATCGAT	2 cut(s)	992, 1008
BseDI	CCNNGG	2 cut(s)	75, 792
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	615, 806
BseMII	CTCAG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	736, 955
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	618
BshVI	ATCGAT	2 cut(s)	992, 1008
BsiHKAI	GWGCWC	2 cut(s)	441, 885
BslI	CCNNNNNNNGG	2 cut(s)	615, 806
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	441, 885
Bsp143I	GATC	5 cut(s)	83, 246, 637, 706, 858
BspACI	CCGC	3 cut(s)	294, 457, 971
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	537
BspDI	ATCGAT	2 cut(s)	992, 1008
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	4 cut(s)	262, 501, 620, 798
BspPI	GGATC	3 cut(s)	91, 254, 714
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	75, 792
BssMI	GATC	5 cut(s)	83, 246, 637, 706, 858
Bst2UI	CCWGG	3 cut(s)	77, 265, 793
Bst4CI	ACNGT	2 cut(s)	202, 231
Bst6I	CTCTTC	1 cut(s)	849
BstBAI	YACGTR	2 cut(s)	209, 536
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	296, 319, 759, 868
BstDEI	CTNAG	2 cut(s)	524, 915
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	2 cut(s)	867, 1018
BstHHI	GCGC	2 cut(s)	866, 1017
BstKTI	GATC	5 cut(s)	86, 249, 640, 709, 861
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	83, 246, 637, 706, 858
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	3 cut(s)	77, 265, 793
BstNSI	RCATGY	2 cut(s)	473, 1004
BstPAI	GACNNNNGTC	1 cut(s)	985
BstSCI	CCNGG	3 cut(s)	75, 263, 791
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	736, 955
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
Bsu15I	ATCGAT	2 cut(s)	992, 1008
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	992, 1008
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	4 cut(s)	296, 319, 759, 868
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	866, 1017
ClaI	ATCGAT	2 cut(s)	992, 1008
Csp6I	GTAC	3 cut(s)	619, 684, 744
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviAII	CATG	7 cut(s)	16, 71, 470, 592, 739, 895, 1001
CviQI	GTAC	3 cut(s)	619, 684, 744
DdeI	CTNAG	2 cut(s)	524, 915
DpnI	GATC	5 cut(s)	85, 248, 639, 708, 860
DpnII	GATC	5 cut(s)	83, 246, 637, 706, 858
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	2 cut(s)	439, 883
Eco24I	GRGCYC	2 cut(s)	441, 885
Eco47III	AGCGCT	1 cut(s)	1016
Eco53kI	GAGCTC	2 cut(s)	439, 883
Eco72I	CACGTG	1 cut(s)	209
EcoICRI	GAGCTC	2 cut(s)	439, 883
EcoRI	GAATTC	2 cut(s)	362, 656
EcoRII	CCWGG	3 cut(s)	75, 263, 791
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	441, 885
FaeI	CATG	7 cut(s)	19, 74, 473, 595, 742, 898, 1004
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FatI	CATG	7 cut(s)	15, 70, 469, 591, 738, 894, 1000
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	750, 969
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	441, 885
Fsp4HI	GCNGC	2 cut(s)	750, 969
FspBI	CTAG	4 cut(s)	65, 384, 411, 876
GlaI	GCGC	2 cut(s)	865, 1016
GluI	GCNGC	2 cut(s)	750, 969
HaeII	RGCGCY	2 cut(s)	867, 1018
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	866, 1017
Hin1II	CATG	7 cut(s)	19, 74, 473, 595, 742, 898, 1004
Hin6I	GCGC	2 cut(s)	864, 1015
HinP1I	GCGC	2 cut(s)	864, 1015
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	4 cut(s)	310, 395, 601, 649
HphI	GGTGA	2 cut(s)	200, 415
Hpy166II	GTNNAC	2 cut(s)	484, 533
Hpy188I	TCNGA	4 cut(s)	88, 127, 606, 733
Hpy188III	TCNNGA	5 cut(s)	164, 646, 653, 739, 876
Hpy8I	GTNNAC	2 cut(s)	484, 533
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	1 cut(s)	968
HpyCH4III	ACNGT	2 cut(s)	202, 231
HpyCH4IV	ACGT	4 cut(s)	159, 208, 535, 931
HpyCH4V	TGCA	6 cut(s)	19, 373, 818, 838, 845, 1000
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	2 cut(s)	524, 915
HpySE526I	ACGT	4 cut(s)	159, 208, 535, 931
Hsp92II	CATG	7 cut(s)	19, 74, 473, 595, 742, 898, 1004
HspAI	GCGC	2 cut(s)	864, 1015
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	83, 246, 637, 706, 858
LmnI	GCTCC	4 cut(s)	66, 380, 436, 796
Lsp1109I	GCAGC	2 cut(s)	736, 955
LweI	GCATC	3 cut(s)	48, 382, 827
MaeI	CTAG	4 cut(s)	65, 384, 411, 876
MaeII	ACGT	4 cut(s)	159, 208, 535, 931
MaeIII	GTNAC	3 cut(s)	272, 536, 932
MalI	GATC	5 cut(s)	85, 248, 639, 708, 860
MboI	GATC	5 cut(s)	83, 246, 637, 706, 858
MboII	GAAGA	4 cut(s)	241, 681, 686, 866
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	441, 885
MnlI	CCTC	2 cut(s)	184, 971
Mph1103I	ATGCAT	1 cut(s)	820
MseI	TTAA	6 cut(s)	288, 579, 633, 680, 782, 954
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	749, 870
MspR9I	CCNGG	3 cut(s)	77, 265, 793
MvaI	CCWGG	3 cut(s)	77, 265, 793
MwoI	GCNNNNNNNGC	1 cut(s)	758
NdeII	GATC	5 cut(s)	83, 246, 637, 706, 858
NlaIII	CATG	7 cut(s)	19, 74, 473, 595, 742, 898, 1004
NlaIV	GGNNCC	4 cut(s)	262, 501, 620, 798
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	2 cut(s)	473, 1004
NspV	TTCGAA	1 cut(s)	366
PagI	TCATGA	1 cut(s)	738
PciI	ACATGT	1 cut(s)	469
PfeI	GAWTC	4 cut(s)	310, 395, 601, 649
PkrI	GCNGC	2 cut(s)	751, 970
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	2 cut(s)	209, 536
PscI	ACATGT	1 cut(s)	469
PshAI	GACNNNNGTC	1 cut(s)	985
Psp124BI	GAGCTC	2 cut(s)	441, 885
Psp6I	CCWGG	3 cut(s)	75, 263, 791
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	75, 263, 791
PspN4I	GGNNCC	4 cut(s)	262, 501, 620, 798
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	2 cut(s)	749, 870
RsaI	GTAC	3 cut(s)	620, 685, 745
RsaNI	GTAC	3 cut(s)	619, 684, 744
RseI	CAYNNNNRTG	1 cut(s)	596
SacI	GAGCTC	2 cut(s)	441, 885
SaqAI	TTAA	6 cut(s)	288, 579, 633, 680, 782, 954
SatI	GCNGC	2 cut(s)	750, 969
Sau3AI	GATC	5 cut(s)	83, 246, 637, 706, 858
ScaI	AGTACT	1 cut(s)	685
ScrFI	CCNGG	3 cut(s)	77, 265, 793
SduI	GDGCHC	2 cut(s)	441, 885
SfaNI	GCATC	3 cut(s)	48, 382, 827
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	596
SpeI	ACTAGT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	294, 457, 971
SspI	AATATT	1 cut(s)	779
SspMI	CTAG	4 cut(s)	65, 384, 411, 876
SstI	GAGCTC	2 cut(s)	441, 885
StyD4I	CCNGG	3 cut(s)	75, 263, 791
TaaI	ACNGT	2 cut(s)	202, 231
TaiI	ACGT	4 cut(s)	162, 211, 538, 934
TaqI	TCGA	6 cut(s)	313, 366, 512, 699, 992, 1008
TatI	WGTACW	2 cut(s)	683, 743
TfiI	GAWTC	4 cut(s)	310, 395, 601, 649
Tru1I	TTAA	6 cut(s)	288, 579, 633, 680, 782, 954
Tru9I	TTAA	6 cut(s)	288, 579, 633, 680, 782, 954
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	2 cut(s)	749, 968
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	4, 59, 82, 166, 496, 911
TspGWI	ACGGA	2 cut(s)	682, 719
TspRI	CASTG	1 cut(s)	603
XapI	RAATTY	4 cut(s)	121, 172, 362, 656
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	2 cut(s)	473, 1004
XspI	CTAG	4 cut(s)	65, 384, 411, 876
ZrmI	AGTACT	1 cut(s)	685
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.