Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

27728283 .. 27730956

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGTTATGCGATCTATTTCTCACGGGGCCGGTTTAATTCCCTATAACATGTCAGGCAAGCTTAAGGTCCCTGAGAATGGATATAAGACGAAGGAAATAAAGGTTGATCATGAGGCTCACGGTGTTGATATTCCACAAGATGTAGAGAAGATAGAACATTTCTTGCGGGAAAGAAATTTGTCCAAAAACTTAGAGAAAAATGAGCTCACTGGCTCAGTTCCTGTAGGGCTTATCGCAAAAAGAGGGCATGGTTTGTCATTGAGTTTGTGCGGAAATCCAAGTTTATCGGGGCAGGTTCCTTGCAAGACGAAGAAGAAAAACAAGTTTGTTATTCCGGTCGTTGTGTCAATTATTGTAACGTTATTGGTCTCATCCATTGCAGCAACTATACTGTGGCAACGTAATAAGAACCATGCTCTTTTTGGTTTCGGGAAAGTTGATAAAATGGCATCTACTGAATCTGAGATCGAAGATAATAGCAAAGGAGCGGATAATGGAGAAGCTGTTCGGAGATTCCAAAGAGTTGATCAAGGTGCATCTACTGAATCTGAGATGGAAGAGAATAGCAAAGGAGATGATAATGGAGAAGGTGGGAAAGTTGATAAAATGGCATCTACTGAATCTGAGATCGAAGATAATAGCAAAGGAGCGGATAATGGAGAAGCTGTTCGGAGATTCCAAAGAGTTGATCAAGGTGCATCTACTGAATCTGAGATGGAAGAGAATAGCAAAGGAGATGATAATGGAGAAGGTGGGTTTGGACAAAATACTCCAGTAATTCTTCCTCTATATTCTTTCACCCATTCAGGGACATTTGATGTGTTCTTGAGTTTTAGAGGTAAGGACACACGCCATGGTGTTATAGGTCATCTTCACGAAGCTTTAACTAGAGTAGGAATTGAGACATTTATTGATGAAAAGAACCTGAAGAAAGGAGCTGAAATAGATAATGCACTTCTTGCTGCAATAGAAGCATCAAAGATCTCTGTCATTATATTGTCAGAAAACTATGCTTCGTCAAGTTGGTGTTTGGATGAACTTATTAAGATCCTTGAATGCAGAGTGTCAAAGCAGCAACATGTTTTCCCGTTTTTCTACAAAGTGGAACCAACAGAAGTACGACATCAATCTGGTAATTTTATCCTTGACGAGTCGAAACACCAGAAGAACAAGGACAAGATTCCTAAATGGAAAGAAGCTCTTAAAGATGTAGCAAATTTGTCGGGATGGACTTATCATGTCGGGTCTGAAGCTGAGATGATCAAGGCTATTGTTAAACAGATATTAGATACTGTCCCAAGCAAAAGAAGTAAGAAGCTGGAGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

443

Amino Acids

48.93

Weight (kDa)

6.31

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	272 - 438	3.2e-48	TIR domain
TIR_2	PF13676	274 - 370	3.5e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccBSI	CCGCTC	2 cut(s)	488, 650
AciI	CCGC	4 cut(s)	166, 270, 488, 650
AclI	AACGTT	1 cut(s)	359
AclWI	GGATC	1 cut(s)	1042
AcsI	RAATTY	2 cut(s)	175, 1216
AcuI	CTGAAG	2 cut(s)	947, 1269
AfaI	GTAC	1 cut(s)	1119
AfiI	CCNNNNNNNGG	2 cut(s)	77, 807
AflII	CTTAAG	1 cut(s)	62
AflIII	ACRYGT	2 cut(s)	48, 1078
AgsI	TTSAA	1 cut(s)	1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AloI	GAACNNNNNNTCC	4 cut(s)	489, 521, 651, 683
AluBI	AGCT	9 cut(s)	61, 205, 503, 665, 881, 938, 1199, 1253, 1318
AluI	AGCT	9 cut(s)	61, 205, 503, 665, 881, 938, 1199, 1253, 1318
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	3 cut(s)	373, 896, 1316
AlwI	GGATC	1 cut(s)	1042
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	380, 962, 1072
ApoI	RAATTY	2 cut(s)	175, 1216
Asp700I	GAANNNNTTC	2 cut(s)	504, 666
AspS9I	GGNCC	2 cut(s)	27, 67
AsuHPI	GGTGA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	392, 949, 1084
BccI	CCATC	3 cut(s)	547, 709, 1221
BcgI	CGANNNNNNTGC	2 cut(s)	1203, 1237
BclI	TGATCA	4 cut(s)	106, 526, 688, 1260
BcoDI	GTCTC	3 cut(s)	373, 896, 1316
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	981
BisI	GCNGC	3 cut(s)	381, 963, 1073
BlsI	GCNGC	3 cut(s)	382, 964, 1074
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	27, 67
BmiI	GGNNCC	4 cut(s)	28, 69, 297, 1107
BmsI	GCATC	5 cut(s)	458, 545, 620, 707, 983
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	853
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 807
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	214, 773
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	853
BseGI	GGATG	3 cut(s)	371, 1039, 1232
BseLI	CCNNNNNNNGG	2 cut(s)	77, 807
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	7 cut(s)	63, 228, 453, 540, 615, 702, 1245
BseNI	ACTGG	2 cut(s)	214, 773
BseXI	GCAGC	3 cut(s)	392, 949, 1084
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	30, 335
BslFI	GGGAC	3 cut(s)	53, 823, 1280
BslI	CCNNNNNNNGG	2 cut(s)	77, 807
BsmAI	GTCTC	3 cut(s)	373, 896, 1316
BsmFI	GGGAC	3 cut(s)	53, 823, 1280
BsmI	GAATGC	1 cut(s)	1061
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
Bsp19I	CCATGG	1 cut(s)	853
BspACI	CCGC	4 cut(s)	166, 270, 488, 650
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	7 cut(s)	64, 227, 454, 541, 616, 703, 1246
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	28, 69, 297, 1107
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	1042
BspTI	CTTAAG	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	373
BsrBI	CCGCTC	2 cut(s)	488, 650
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	214, 773
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	853
BssMI	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
BssT1I	CCWWGG	1 cut(s)	853
Bst4CI	ACNGT	3 cut(s)	122, 393, 1294
Bst6I	CTCTTC	2 cut(s)	552, 714
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	8 cut(s)	72, 190, 214, 462, 549, 624, 711, 1254
BstDSI	CCRYGG	1 cut(s)	853
BstF5I	GGATG	3 cut(s)	371, 1039, 1232
BstKTI	GATC	9 cut(s)	14, 109, 468, 529, 630, 691, 984, 1050, 1263
BstMAI	GTCTC	3 cut(s)	373, 896, 1316
BstMBI	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	2 cut(s)	959, 971
BstNSI	RCATGY	2 cut(s)	52, 1082
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	392, 949, 1084
BstX2I	RGATCY	2 cut(s)	981, 1047
BstYI	RGATCY	2 cut(s)	981, 1047
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	853
BtsCI	GGATG	3 cut(s)	371, 1039, 1232
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	27, 67
Csp6I	GTAC	1 cut(s)	1118
CviAII	CATG	7 cut(s)	49, 110, 248, 413, 854, 1079, 1238
CviQI	GTAC	1 cut(s)	1118
DdeI	CTNAG	8 cut(s)	72, 190, 214, 462, 549, 624, 711, 1254
DpnI	GATC	9 cut(s)	13, 108, 467, 528, 629, 690, 983, 1049, 1262
DpnII	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
Eam1104I	CTCTTC	2 cut(s)	552, 714
EarI	CTCTTC	2 cut(s)	552, 714
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	947, 1269
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	7 cut(s)	52, 113, 251, 416, 857, 1082, 1241
FalI	AAGNNNNNCTT	2 cut(s)	1185, 1217
FaqI	GGGAC	3 cut(s)	53, 823, 1280
FatI	CATG	7 cut(s)	48, 109, 247, 412, 853, 1078, 1237
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	4 cut(s)	106, 526, 688, 1260
Fnu4HI	GCNGC	3 cut(s)	381, 963, 1073
FokI	GGATG	3 cut(s)	358, 1046, 1239
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	381, 963, 1073
FspBI	CTAG	1 cut(s)	888
GluI	GCNGC	3 cut(s)	381, 963, 1073
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	30, 335
Hin1II	CATG	7 cut(s)	52, 113, 251, 416, 857, 1082, 1241
HindIII	AAGCTT	2 cut(s)	59, 879
HinfI	GANTC	9 cut(s)	458, 513, 545, 620, 675, 707, 1151, 1180, 1324
HpaII	CCGG	2 cut(s)	30, 335
HphI	GGTGA	1 cut(s)	790
Hpy188I	TCNGA	8 cut(s)	463, 510, 550, 625, 672, 712, 1003, 1249
Hpy188III	TCNNGA	5 cut(s)	110, 430, 826, 875, 1224
HpyAV	CCTTC	3 cut(s)	85, 581, 743
HpyCH4III	ACNGT	3 cut(s)	122, 393, 1294
HpyCH4IV	ACGT	2 cut(s)	359, 400
HpyCH4V	TGCA	7 cut(s)	303, 380, 536, 698, 953, 965, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	959, 971
HpyF3I	CTNAG	8 cut(s)	72, 190, 214, 462, 549, 624, 711, 1254
HpySE526I	ACGT	2 cut(s)	359, 400
Hsp92II	CATG	7 cut(s)	52, 113, 251, 416, 857, 1082, 1241
Ksp22I	TGATCA	4 cut(s)	106, 526, 688, 1260
Kzo9I	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
LmnI	GCTCC	3 cut(s)	485, 647, 935
Lsp1109I	GCAGC	3 cut(s)	392, 949, 1084
LweI	GCATC	5 cut(s)	458, 545, 620, 707, 983
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	2 cut(s)	359, 400
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	9 cut(s)	13, 108, 467, 528, 629, 690, 983, 1049, 1262
MbiI	CCGCTC	2 cut(s)	488, 650
MboI	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
MflI	RGATCY	2 cut(s)	981, 1047
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	7 cut(s)	36, 175, 348, 777, 897, 1135, 1216
MlyI	GAGTC	2 cut(s)	1160, 1318
MnlI	CCTC	4 cut(s)	106, 236, 795, 830
MroXI	GAANNNNTTC	2 cut(s)	504, 666
MseI	TTAA	6 cut(s)	35, 63, 884, 1044, 1203, 1275
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	2 cut(s)	30, 335
Mva1269I	GAATGC	1 cut(s)	1061
MwoI	GCNNNNNNNGC	2 cut(s)	959, 971
NcoI	CCATGG	1 cut(s)	853
NdeII	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
NlaIII	CATG	7 cut(s)	52, 113, 251, 416, 857, 1082, 1241
NlaIV	GGNNCC	4 cut(s)	28, 69, 297, 1107
NspI	RCATGY	2 cut(s)	52, 1082
PagI	TCATGA	1 cut(s)	109
PciI	ACATGT	2 cut(s)	48, 1078
PctI	GAATGC	1 cut(s)	1061
PdmI	GAANNNNTTC	2 cut(s)	504, 666
PfeI	GAWTC	7 cut(s)	458, 513, 545, 620, 675, 707, 1180
PkrI	GCNGC	3 cut(s)	382, 964, 1074
PleI	GAGTC	2 cut(s)	1159, 1318
PpsI	GAGTC	2 cut(s)	1159, 1318
PpuMI	RGGWCCY	1 cut(s)	67
PscI	ACATGT	2 cut(s)	48, 1078
Psp124BI	GAGCTC	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	28, 69, 297, 1107
PspPI	GGNCC	2 cut(s)	27, 67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	981, 1047
RsaI	GTAC	1 cut(s)	1119
RsaNI	GTAC	1 cut(s)	1118
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	6 cut(s)	35, 63, 884, 1044, 1203, 1275
SatI	GCNGC	3 cut(s)	381, 963, 1073
Sau3AI	GATC	9 cut(s)	11, 106, 465, 526, 627, 688, 981, 1047, 1260
Sau96I	GGNCC	2 cut(s)	27, 67
SchI	GAGTC	2 cut(s)	1160, 1318
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	5 cut(s)	458, 545, 620, 707, 983
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	62, 826
SmoI	CTYRAG	2 cut(s)	62, 826
Sse9I	AATT	7 cut(s)	36, 175, 348, 777, 897, 1135, 1216
SsiI	CCGC	4 cut(s)	166, 270, 488, 650
SspMI	CTAG	1 cut(s)	888
SstI	GAGCTC	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	3 cut(s)	122, 393, 1294
TaiI	ACGT	2 cut(s)	362, 403
TaqI	TCGA	3 cut(s)	468, 630, 1154
TasI	AATT	7 cut(s)	36, 175, 348, 777, 897, 1135, 1216
TfiI	GAWTC	7 cut(s)	458, 513, 545, 620, 675, 707, 1180
Tru1I	TTAA	6 cut(s)	35, 63, 884, 1044, 1203, 1275
Tru9I	TTAA	6 cut(s)	35, 63, 884, 1044, 1203, 1275
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	3 cut(s)	380, 962, 1072
TspDTI	ATGAA	2 cut(s)	930, 1050
TspRI	CASTG	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	2 cut(s)	175, 1216
XceI	RCATGY	2 cut(s)	52, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	504, 666
XspI	CTAG	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.