Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Forward (+)

38622328 .. 38623145

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTGCGTCTGTTCATCTTGCTCCAGAGCTATTCCCTCTTGTCATTTCCAGGACAGGGAAGAATAGACCTAATAAAGAGTATAAAATGCACTCCAGGTGTGCATTACCTTCTGAAGGAGCTTCATCAACTCGCCGACTTGTAGTATATGCGGGTGCTTCTATCCTTGCGGTTCTAGCAACTAACTATGGGTTAGCGCCATTGCCTGTTTTGGCAGATGACAAATCAAATGGTGAAGATGAGAGGGATGGAGTTTTAGGTGCTATCCAGTCGCTGCTCGAAACCAATACGAAAACCAAGTCTGGAAGAGTGTTGCCAAAGGCATATTTGAAGACTGCAAAAGAAGTTGTGAAGACACTGCGGGAATCAGTACAGGAAGATCCCAAGGATAATGCAAAGTTTAGACGTACTGCAGATGCAGCAAAGGAATCAATTCGAGAGTATTTGAGCAATTGGAGGGGACAGCCAACGAAAGCAATAAGATCATTGGCCGGCTTTTACTCGAAGGCAGGACCATCTGCCCCATTGCCTGAAGAAGTGAAGTCAGATATATTGAGGGATTTAGATACAGCTGAAAAGTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

195

Amino Acids

21.3

Weight (kDa)

9.47

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	46 - 195	3.8e-35	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 170, 361
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	489
AcuI	CTGAAG	2 cut(s)	135, 552
AfaI	GTAC	2 cut(s)	372, 409
AfiI	CCNNNNNNNGG	2 cut(s)	57, 116
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	50, 95
AluBI	AGCT	3 cut(s)	31, 122, 572
AluI	AGCT	3 cut(s)	31, 122, 572
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	5, 274, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	512
BbsI	GAAGAC	2 cut(s)	338, 359
BbvI	GCAGC	2 cut(s)	261, 431
BccI	CCATC	2 cut(s)	242, 523
BciT130I	CCWGG	2 cut(s)	52, 97
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	3 cut(s)	6, 275, 420
BlsI	GCNGC	3 cut(s)	7, 276, 421
Bme1390I	CCNGG	2 cut(s)	52, 97
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	52, 97
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	338, 359
BpmI	CTGGAG	2 cut(s)	9, 79
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 116
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	200, 524
BseBI	CCWGG	2 cut(s)	52, 97
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	57, 116
BseMI	GCAATG	2 cut(s)	200, 524
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	261, 431
BshFI	GGCC	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	57, 116
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	379, 482
BspACI	CCGC	3 cut(s)	152, 170, 361
BspANI	GGCC	1 cut(s)	491
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	200, 524
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	379, 482
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	52, 97
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	382, 485
BstMBI	GATC	2 cut(s)	379, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 419
BstNI	CCWGG	2 cut(s)	52, 97
BstSCI	CCNGG	2 cut(s)	50, 95
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	261, 431
BstV2I	GAAGAC	2 cut(s)	338, 359
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	371, 408
CviJI	RGCY	7 cut(s)	5, 31, 122, 466, 491, 495, 572
CviKI_1	RGCY	7 cut(s)	5, 31, 122, 466, 491, 495, 572
CviQI	GTAC	2 cut(s)	371, 408
DpnI	GATC	2 cut(s)	381, 484
DpnII	GATC	2 cut(s)	379, 482
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	135, 552
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	50, 95
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaiI	YATR	7 cut(s)	84, 148, 150, 189, 325, 551, 586
FaqI	GGGAC	1 cut(s)	474
FauI	CCCGC	2 cut(s)	145, 354
Fnu4HI	GCNGC	3 cut(s)	6, 275, 420
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	6, 275, 420
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	6, 275, 420
GsuI	CTGGAG	2 cut(s)	9, 79
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	2 cut(s)	365, 428
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	115, 547
Hpy188III	TCNNGA	3 cut(s)	26, 303, 437
HpyAV	CCTTC	3 cut(s)	110, 120, 499
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	91, 104, 338, 395, 413, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 419
HpySE526I	ACGT	1 cut(s)	406
HspAI	GCGC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	491
KroNI	GCCGGC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	379, 482
LmnI	GCTCC	2 cut(s)	28, 119
Lsp1109I	GCAGC	2 cut(s)	261, 431
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	381, 484
MboI	GATC	2 cut(s)	379, 482
MboII	GAAGA	7 cut(s)	73, 248, 318, 343, 364, 389, 545
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	2 cut(s)	432, 451
MnlI	CCTC	4 cut(s)	48, 237, 450, 549
MroNI	GCCGGC	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	2 cut(s)	52, 97
MunI	CAATTG	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	52, 97
MwoI	GCNNNNNNNGC	2 cut(s)	176, 419
NaeI	GCCGGC	1 cut(s)	493
NdeII	GATC	2 cut(s)	379, 482
NgoMIV	GCCGGC	1 cut(s)	491
PdiI	GCCGGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	365, 428
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	7, 276, 421
Psp6I	CCWGG	2 cut(s)	50, 95
PspGI	CCWGG	2 cut(s)	50, 95
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	372, 409
RsaNI	GTAC	2 cut(s)	371, 408
SatI	GCNGC	3 cut(s)	6, 275, 420
Sau3AI	GATC	2 cut(s)	379, 482
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	52, 97
SetI	ASST	8 cut(s)	33, 73, 101, 112, 124, 262, 409, 574
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	512
Sse9I	AATT	2 cut(s)	432, 451
SsiI	CCGC	3 cut(s)	152, 170, 361
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	50, 95
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	279, 436, 503
TasI	AATT	2 cut(s)	432, 451
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	365, 428
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	3 cut(s)	5, 274, 419
TspDTI	ATGAA	2 cut(s)	5, 114
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.