Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

27699387 .. 27700378

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCTCACTGGCTCAGTTCCTTTTGTGCGGAAATCCAGGTTTATCAGGGCAGGTTCCTTGCAAGACGAAGAAGAAAAACAAGTTTGTTATTCCGGTCGTTGTTTCAATTATTGTAATGTTATTGGTCTCATCCATTGCAGCAACTATACTGTGGAAACGTAAAAAGAACCATGGGACATATGATTATGATGTGTTCTTGAGTTTTAGAGGTAAGGATACACGCGAAGGTGTTATAGGTTATCTTCACGATGCTTTAACTAGAGAAGGAATTAAGACATTTCTTGATGCTGAAGGGCTGGAGGTAGGGGAAGAAATAAAAACTTCACTTCTTGGTGCAATAGAAGCATCAATGATCTCTATCATTATATTATCAGAAAACTATGTTTCGTCACATTGGCGTTTGGATGAATTAGTTAAGATCCTTGAATGTAAAAAGTCAAAGCAGCAACGTGTTTTCCCATTTTTCTACAAAGTGGAACCAACAGAAGGGTTTGGAACCCAGCCTAACTGGGAGGCTCAGCCCCACGCCCATAATTATACTGCGAGGGGGACATATAACCTGAACCTCGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

192

Amino Acids

21.67

Weight (kDa)

8.67

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	63 - 163	6.1e-32	TIR domain
TIR_2	PF13676	65 - 159	1.2e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	108, 428
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	140, 445
AvaI	CYCGRG	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	152, 457
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	141, 446
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	2 cut(s)	142, 447
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	569
BmiI	GGNNCC	3 cut(s)	57, 480, 499
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	3 cut(s)	241, 277, 356
BmuI	ACTGGG	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	15, 515
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	131, 412
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	29, 533
BseNI	ACTGG	2 cut(s)	15, 515
BseXI	GCAGC	2 cut(s)	152, 457
BseYI	CCCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	190, 565
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	190, 565
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	354, 420
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	2 cut(s)	28, 532
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	57, 480, 499
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	15, 515
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	354, 420
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	15, 519
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	131, 412
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	357, 423
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	354, 420
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	152, 457
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	131, 412
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	6 cut(s)	6, 14, 298, 505, 518, 523
CviKI_1	RGCY	6 cut(s)	6, 14, 298, 505, 518, 523
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	15, 519
DpnI	GATC	2 cut(s)	356, 422
DpnII	GATC	2 cut(s)	354, 420
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	176
FaqI	GGGAC	2 cut(s)	190, 565
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	141, 446
FokI	GGATG	2 cut(s)	118, 419
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	141, 446
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	141, 446
GsaI	CCCAGC	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	320
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	176
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	3 cut(s)	199, 248, 284
HpyAV	CCTTC	4 cut(s)	221, 260, 287, 482
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	160, 451
HpyCH4V	TGCA	3 cut(s)	63, 140, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	15, 519
HpySE526I	ACGT	2 cut(s)	160, 451
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	354, 420
LpnPI	CCDG	9 cut(s)	24, 33, 38, 51, 108, 284, 496, 515, 575
Lsp1109I	GCAGC	2 cut(s)	152, 457
LweI	GCATC	3 cut(s)	241, 277, 356
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	160, 451
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	356, 422
MboI	GATC	2 cut(s)	354, 420
MboII	GAAGA	4 cut(s)	82, 85, 236, 323
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	108, 270, 410, 535
MnlI	CCTC	5 cut(s)	203, 295, 508, 540, 578
MseI	TTAA	3 cut(s)	257, 273, 417
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	354, 420
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	57, 480, 499
NmuCI	GTSAC	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	142, 447
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	57, 480, 499
PspXI	VCTCGAGB	1 cut(s)	569
PsrI	GAACNNNNNNTAC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	257, 273, 417
SatI	GCNGC	2 cut(s)	141, 446
Sau3AI	GATC	2 cut(s)	354, 420
ScaI	AGTACT	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	241, 277, 356
Sfr274I	CTCGAG	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	199, 569
SmoI	CTYRAG	2 cut(s)	199, 569
Sse9I	AATT	4 cut(s)	108, 270, 410, 535
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	2 cut(s)	163, 454
TaqI	TCGA	1 cut(s)	570
TasI	AATT	4 cut(s)	108, 270, 410, 535
TatI	WGTACW	1 cut(s)	573
Tru1I	TTAA	3 cut(s)	257, 273, 417
Tru9I	TTAA	3 cut(s)	257, 273, 417
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	2 cut(s)	140, 445
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	569
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.