Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

1015696 .. 1017865

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGTTCATGTTCTTCTTGCAGCAAAGACCTTTCCCCCTGTAATTTCCAGGACAAGGGAGAATACCTTGAAACCTGCCAAAGAGTATAAAGTACAATCCAGATGTGAGCTACCCTCTCAAGAAGCTTCATCAAGTCGCCGCCATTTTGTAGCTGGTGCCATGATTGTTACGATTCTGACCATTAACTATGGCTTAGCACCATCACCGGTTTGGGCTGATGATAAGTCGGATGATGAAGAGGAAAAGGATGGAGTTATAGGTGCTCTTAAATCACTGTTTGACCCTAATGAGAAAACCAAGTCTGGAAAAGTGTTGCCGAAGGCTTACTTGAAGTCAGCAAAGGAGGTCGTGAAGACATTGCGCGAATCGCTGAATGAAGATCCTAAGGATAATGCCAAATTCAGGCGTACTGCAGATGCAGCAAAGGAGTCGATTCGAGAGTATTTGGGCAATTGGAGAGGACAACAAGAGGTGGCTCAAGAGGAGTCTTATGTTGAGATTGAGAAAGCGATACGATCGTTGGCCGGCTTTTATTCCAAGGCAGGGCCTTCTGCCCCGCTGCCTGAAGAAGTTAAGTCTGAGATATTGAATGATTTGAATACAGCTGAAGCGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

6.23

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	142, 560
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	2 cut(s)	96, 412
AfiI	CCNNNNNNNGG	3 cut(s)	57, 405, 546
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	4 cut(s)	73, 334, 592, 601
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	4 cut(s)	112, 128, 155, 608
AluI	AGCT	4 cut(s)	112, 128, 155, 608
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	525, 548
ApeKI	GCWGC	3 cut(s)	23, 422, 562
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	198
AxyI	CCTNAGG	1 cut(s)	387
BaeI	ACNNNNGTAYC	2 cut(s)	506, 539
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	35, 434, 549
BccI	CCATC	2 cut(s)	211, 245
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	24, 142, 423, 563
BlpI	GCTNAGC	1 cut(s)	196
BlsI	GCNGC	4 cut(s)	25, 143, 424, 564
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu1102I	GCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	105, 465
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 405, 546
Bse118I	RCCGGY	2 cut(s)	208, 527
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	238, 256
BseLI	CCNNNNNNNGG	3 cut(s)	57, 405, 546
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	35, 434, 549
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	2 cut(s)	527, 550
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	209, 528
BslI	CCNNNNNNNGG	3 cut(s)	57, 405, 546
BsnI	GGCC	2 cut(s)	527, 550
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	382, 518
Bsp1720I	GCTNAGC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	142, 560
BspANI	GGCC	2 cut(s)	527, 550
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	2 cut(s)	208, 527
BssAI	RCCGGY	2 cut(s)	208, 527
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	2 cut(s)	382, 518
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	196, 387, 582
BstF5I	GGATG	2 cut(s)	238, 256
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	385, 521
BstMBI	GATC	2 cut(s)	382, 518
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 422
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	35, 434, 549
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	527, 550
BtsCI	GGATG	2 cut(s)	238, 256
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	1 cut(s)	366
Cfr10I	RCCGGY	2 cut(s)	208, 527
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	95, 411
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	11, 163
CviQI	GTAC	2 cut(s)	95, 411
DdeI	CTNAG	3 cut(s)	196, 387, 582
DpnI	GATC	2 cut(s)	384, 520
DpnII	GATC	2 cut(s)	382, 518
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	588
Eco81I	CCTNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	2 cut(s)	14, 166
FaiI	YATR	6 cut(s)	12, 90, 164, 192, 260, 495
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	2 cut(s)	10, 162
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	24, 142, 423, 563
FokI	GGATG	2 cut(s)	245, 263
Fsp4HI	GCNGC	4 cut(s)	24, 142, 423, 563
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	4 cut(s)	24, 142, 423, 563
HaeIII	GGCC	2 cut(s)	527, 550
HapII	CCGG	2 cut(s)	209, 528
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	14, 166
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	5 cut(s)	175, 368, 431, 436, 488
HpaII	CCGG	2 cut(s)	209, 528
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	180, 232, 583
Hpy188III	TCNNGA	6 cut(s)	102, 122, 306, 352, 440, 482
HpyAV	CCTTC	2 cut(s)	316, 561
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	23, 416, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 422
HpyF3I	CTNAG	3 cut(s)	196, 387, 582
Hsp92II	CATG	2 cut(s)	14, 166
HspAI	GCGC	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	382, 518
Lsp1109I	GCAGC	3 cut(s)	35, 434, 549
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	384, 520
MboI	GATC	2 cut(s)	382, 518
MboII	GAAGA	5 cut(s)	8, 251, 367, 392, 581
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	45, 401, 454
MlyI	GAGTC	2 cut(s)	440, 497
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	127, 235, 340, 455, 466, 478
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	3 cut(s)	186, 270, 576
MspA1I	CMGCKG	2 cut(s)	562, 608
MspI	CCGG	2 cut(s)	209, 528
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	370, 422
NaeI	GCCGGC	1 cut(s)	529
NdeII	GATC	2 cut(s)	382, 518
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	2 cut(s)	14, 166
NlaIV	GGNNCC	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	175, 368, 436
PfoI	TCCNGGA	1 cut(s)	50
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	25, 143, 424, 564
Ple19I	CGATCG	1 cut(s)	521
PleI	GAGTC	2 cut(s)	439, 496
PpsI	GAGTC	2 cut(s)	439, 496
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	96, 412
RsaNI	GTAC	2 cut(s)	95, 411
SaqAI	TTAA	3 cut(s)	186, 270, 576
SatI	GCNGC	4 cut(s)	24, 142, 423, 563
Sau3AI	GATC	2 cut(s)	382, 518
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	2 cut(s)	440, 497
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	120, 480
SmoI	CTYRAG	2 cut(s)	120, 480
Sse9I	AATT	3 cut(s)	45, 401, 454
SsiI	CCGC	2 cut(s)	142, 560
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	434, 439
TasI	AATT	3 cut(s)	45, 401, 454
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	175, 368, 436
Tru1I	TTAA	3 cut(s)	186, 270, 576
Tru9I	TTAA	3 cut(s)	186, 270, 576
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	3 cut(s)	23, 422, 562
TspDTI	ATGAA	3 cut(s)	120, 252, 393
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	2 cut(s)	152, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.