Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

23060532 .. 23064569

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAGCTGAACAACAGGAATCAAGATCCAGGAGTTTATAGTACACGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAGCTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACTCCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGGGATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAAAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCGCTTTCGCAAATCTGACAGGCTTCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

195

Amino Acids

21.67

Weight (kDa)

5.99

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	3 cut(s)	102, 125, 563
AfaI	GTAC	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	7, 80, 161, 183, 199, 353, 389
AluI	AGCT	7 cut(s)	7, 80, 161, 183, 199, 353, 389
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	20
ApeKI	GCWGC	5 cut(s)	4, 94, 158, 389, 540
BbvI	GCAGC	5 cut(s)	16, 106, 170, 376, 552
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	6 cut(s)	5, 95, 159, 390, 541, 544
BlsI	GCNGC	6 cut(s)	6, 96, 160, 391, 542, 545
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	350, 448, 519
Bpu10I	CCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	4 cut(s)	284, 331, 341, 534
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	5 cut(s)	16, 106, 170, 376, 552
BsgI	GTGCAG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	544
BspCNI	CTCAG	1 cut(s)	324
BspPI	GGATC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	3 cut(s)	105, 283, 522
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstDEI	CTNAG	4 cut(s)	117, 311, 349, 548
BstF5I	GGATG	4 cut(s)	284, 331, 341, 534
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 549
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	5 cut(s)	16, 106, 170, 376, 552
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	284, 331, 341, 534
BtsIMutI	CAGTG	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	272, 383
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	4 cut(s)	117, 311, 349, 548
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	3 cut(s)	105, 283, 522
EarI	CTCTTC	3 cut(s)	105, 283, 522
Eco57I	CTGAAG	3 cut(s)	102, 125, 563
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	275, 386
FaiI	YATR	7 cut(s)	39, 215, 247, 269, 273, 384, 586
FatI	CATG	2 cut(s)	271, 382
Fnu4HI	GCNGC	6 cut(s)	5, 95, 159, 390, 541, 544
FokI	GGATG	4 cut(s)	271, 328, 338, 541
Fsp4HI	GCNGC	6 cut(s)	5, 95, 159, 390, 541, 544
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	6 cut(s)	5, 95, 159, 390, 541, 544
Hin1II	CATG	2 cut(s)	275, 386
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	4 cut(s)	19, 113, 426, 514
Hpy166II	GTNNAC	3 cut(s)	44, 418, 485
Hpy188I	TCNGA	3 cut(s)	314, 528, 571
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	3 cut(s)	44, 418, 485
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	3 cut(s)	51, 400, 444
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	4, 227, 341, 392, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 549
HpyF3I	CTNAG	4 cut(s)	117, 311, 349, 548
Hsp92II	CATG	2 cut(s)	275, 386
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	15, 42, 131, 140, 308, 501, 507, 559, 566
Lsp1109I	GCAGC	5 cut(s)	16, 106, 170, 376, 552
LweI	GCATC	3 cut(s)	350, 448, 519
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	122, 131, 270, 509
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	98, 210, 305
MlyI	GAGTC	2 cut(s)	122, 508
MnlI	CCTC	3 cut(s)	286, 292, 298
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	467, 549
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	275, 386
NmuCI	GTSAC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	19, 426
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	6 cut(s)	6, 96, 160, 391, 542, 545
PleI	GAGTC	2 cut(s)	121, 508
PpsI	GAGTC	2 cut(s)	121, 508
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	6 cut(s)	5, 95, 159, 390, 541, 544
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	2 cut(s)	122, 508
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	9 cut(s)	9, 62, 82, 163, 185, 201, 355, 391, 585
SfaNI	GCATC	3 cut(s)	350, 448, 519
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	98, 210, 305
SsiI	CCGC	1 cut(s)	544
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	98, 210, 305
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	19, 426
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	5 cut(s)	4, 94, 158, 389, 540
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	386, 399, 516
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	172
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.