Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

56506486 .. 56507542

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGCTCGTTGCCAACGAAGAATTCCAGCACATTCTGCGTGTGCTCAACACCAACGTCGATGGGAAGCAGAAGATCATGTTTGCCATGACCTCCATCAAAGGTATTGGCCGCCGTTTGGCCAATATCGTCTGCAAAAAGGCCGATGTCGACATGAACAAGAGAGCTGGTGAACTATCTGCTGCCGAGATTGATAACCTCATGACAATTGTTGGGAATCCTCGCCAGTTCAAAATTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAGGTATTCCCAAGTTGTTGCCAATGCTTTGGACATGAAGCTGAGAGATGATCTCGAGCGGTTGAAGAAGATCAGGAACCACCGTGGTCTTCGTCACTACTGGGGTCTTCGGGTACGTGGGCAGCACACCAAGACTACTGGTCGCAGGGGAAAGACCGTTGGTGTCTCCAAGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

152

Amino Acids

17.56

Weight (kDa)

10.64

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	5.7e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	112, 337
AcoI	YGGCCR	2 cut(s)	109, 120
AcsI	RAATTY	2 cut(s)	23, 234
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	232, 253, 343
AhdI	GACNNNNNGTC	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	2 cut(s)	167, 319
AluI	AGCT	2 cut(s)	167, 319
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	109, 120, 141
ApeKI	GCWGC	2 cut(s)	182, 400
ApoI	RAATTY	2 cut(s)	23, 234
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	359, 377
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	169, 412
BccI	CCATC	3 cut(s)	56, 104, 269
BceAI	ACGGC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	448
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	3 cut(s)	112, 183, 401
BlsI	GCNGC	3 cut(s)	113, 184, 402
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	359, 377
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	226, 383, 421
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	226, 383, 421
BseXI	GCAGC	2 cut(s)	169, 412
BshFI	GGCC	3 cut(s)	111, 122, 143
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	111, 122, 143
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	75, 328, 348
BspACI	CCGC	2 cut(s)	112, 337
BspANI	GGCC	3 cut(s)	111, 122, 143
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	356
BspMI	ACCTGC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	226, 383, 421
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	75, 328, 348
Bst4CI	ACNGT	2 cut(s)	362, 436
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	78, 331, 351
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	75, 328, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	169, 412
BstV2I	GAAGAC	2 cut(s)	359, 377
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	111, 122, 143
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	5 cut(s)	79, 88, 154, 202, 313
CviJI	RGCY	5 cut(s)	111, 122, 143, 167, 319
CviKI_1	RGCY	5 cut(s)	111, 122, 143, 167, 319
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	77, 330, 350
DpnII	GATC	3 cut(s)	75, 328, 348
DriI	GACNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	2 cut(s)	109, 120
Eam1105I	GACNNNNNGTC	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	23
FaeI	CATG	5 cut(s)	82, 91, 157, 205, 316
FaiI	YATR	5 cut(s)	80, 89, 155, 203, 314
FatI	CATG	5 cut(s)	78, 87, 153, 201, 312
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	112, 183, 401
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	112, 183, 401
GluI	GCNGC	3 cut(s)	112, 183, 401
HaeIII	GGCC	3 cut(s)	111, 122, 143
Hin1II	CATG	5 cut(s)	82, 91, 157, 205, 316
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	151, 173
Hpy188III	TCNNGA	4 cut(s)	202, 239, 332, 352
Hpy8I	GTNNAC	2 cut(s)	151, 173
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	362, 436
HpyCH4IV	ACGT	2 cut(s)	57, 394
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	57, 394
Hsp92II	CATG	5 cut(s)	82, 91, 157, 205, 316
Kzo9I	GATC	3 cut(s)	75, 328, 348
LpnPI	CCDG	9 cut(s)	41, 153, 239, 252, 265, 337, 364, 402, 409
Lsp1109I	GCAGC	2 cut(s)	169, 412
MaeII	ACGT	2 cut(s)	57, 394
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	77, 330, 350
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	3 cut(s)	75, 328, 348
MboII	GAAGA	6 cut(s)	32, 85, 355, 358, 359, 377
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	23, 207, 234
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	3 cut(s)	103, 209, 231
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	75, 328, 348
NlaIII	CATG	5 cut(s)	82, 91, 157, 205, 316
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	113, 184, 402
Ppu21I	YACGTR	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	3 cut(s)	112, 183, 401
Sau3AI	GATC	3 cut(s)	75, 328, 348
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	60, 95, 106, 169, 201, 284, 321, 397
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	23, 207, 234
SsiI	CCGC	2 cut(s)	112, 337
TaaI	ACNGT	2 cut(s)	362, 436
TaiI	ACGT	2 cut(s)	60, 397
TaqI	TCGA	3 cut(s)	60, 150, 333
TasI	AATT	3 cut(s)	23, 207, 234
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	182, 400
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	170, 329
XapI	RAATTY	2 cut(s)	23, 234
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.