Rh4DG117400

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001431
Physical Location & Seq
Forward (+)
18609999 .. 18611080
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG117400.1

Sequence Viewer

Length: 279 bp
ATGAACACCGTCGAGCAGGTGATGGAGGTGATGCACGCGTCGGTCTATTTCGAGAATTTTGAAGTCTCTCGTCGCGAACGAGAGTTGCAGCACATTTTGCGTGTTCTGAACACCAATGTGGATGGAAATCAAAAGATCATGTTCGCTCTGACCTCCATCAAGGATATCGGTCGCCGTTTAGCCAACATCATCTGCAAGAAGGCCAATGTAGACATGAACAGGAGGGACATGCTTGGATCAGTAGAGCTTCAAGAAGTTGCTATCTTGTTAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006611 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0030867 GO:0031090 GO:0031503 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042175 GO:0042254 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S13

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

6.08

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 34 - 75 8.5e-12 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 210
AccII CGCG 2 cut(s) 38, 75
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 62, 251
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 244
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 31, 40
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 16, 116, 164
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 7
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmsI GCATC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 126
BseGI GGATG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 38, 75
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 135, 236
Bsp68I TCGCGA 1 cut(s) 75
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 2 cut(s) 38, 75
BspMI ACCTGC 1 cut(s) 7
BspPI GGATC 1 cut(s) 244
BssMI GATC 2 cut(s) 135, 236
Bst4CI ACNGT 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 36
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 38, 75
BstKTI GATC 2 cut(s) 138, 239
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 135, 236
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 232
BstUI CGCG 2 cut(s) 38, 75
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 127
BtuMI TCGCGA 1 cut(s) 75
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 1 cut(s) 27
CviAII CATG 3 cut(s) 139, 214, 229
CviJI RGCY 3 cut(s) 182, 203, 247
CviKI_1 RGCY 3 cut(s) 182, 203, 247
DpnI GATC 2 cut(s) 137, 238
DpnII GATC 2 cut(s) 135, 236
Eco32I GATATC 1 cut(s) 166
EcoRV GATATC 1 cut(s) 166
FaeI CATG 3 cut(s) 142, 217, 232
FaiI YATR 3 cut(s) 140, 215, 230
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 138, 213, 228
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 203
HgaI GACGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 142, 217, 232
HphI GGTGA 2 cut(s) 31, 40
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 108, 150
Hpy188III TCNNGA 3 cut(s) 52, 74, 251
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 3 cut(s) 14, 43, 75
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 34, 88, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 142, 217, 232
Kzo9I GATC 2 cut(s) 135, 236
LpnPI CCDG 2 cut(s) 2, 205
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 21
MalI GATC 2 cut(s) 137, 238
MboI GATC 2 cut(s) 135, 236
MluCI AATT 1 cut(s) 55
MluI ACGCGT 1 cut(s) 36
MnlI CCTC 3 cut(s) 19, 163, 216
MslI CAYNNNNRTG 1 cut(s) 116
MvnI CGCG 2 cut(s) 38, 75
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 2 cut(s) 135, 236
NlaIII CATG 3 cut(s) 142, 217, 232
NruI TCGCGA 1 cut(s) 75
NspI RCATGY 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PkrI GCNGC 1 cut(s) 90
RruI TCGCGA 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 135, 236
SetI ASST 4 cut(s) 21, 30, 155, 249
SfaNI GCATC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 1 cut(s) 55
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 12, 51
TaqII GACCGA 2 cut(s) 31, 158
TasI AATT 1 cut(s) 55
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 17, 230
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.