Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

12370065 .. 12371554

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTTTGCGTGTGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGAAGGAGATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCAAGACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGGGAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

152

Amino Acids

17.55

Weight (kDa)

10.54

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	6.2e-58	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AclI	AACGTT	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	120
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	232, 253
AhdI	GACNNNNNGTC	1 cut(s)	417
AluBI	AGCT	2 cut(s)	185, 319
AluI	AGCT	2 cut(s)	185, 319
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	5 cut(s)	9, 301, 344, 364, 389
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	56, 269, 366
BcoDI	GTCTC	5 cut(s)	9, 301, 344, 364, 389
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	3 cut(s)	273, 326, 353
BsaI	GGTCTC	1 cut(s)	389
Bse1I	ACTGG	3 cut(s)	248, 383, 421
BseGI	GGATG	2 cut(s)	280, 331
BseMII	CTCAG	3 cut(s)	177, 334, 359
BseNI	ACTGG	3 cut(s)	248, 383, 421
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	48
BsmAI	GTCTC	5 cut(s)	9, 301, 344, 364, 389
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	3 cut(s)	178, 333, 360
BspHI	TCATGA	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	248, 383, 421
BssMI	GATC	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	228, 436
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	186, 320, 368, 447
BstF5I	GGATG	2 cut(s)	280, 331
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	5 cut(s)	9, 301, 344, 364, 389
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	280, 331
CciI	TCATGA	1 cut(s)	201
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	154, 202, 313
CviJI	RGCY	5 cut(s)	122, 143, 167, 185, 319
CviKI_1	RGCY	5 cut(s)	122, 143, 167, 185, 319
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	186, 320, 368, 447
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DriI	GACNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	3 cut(s)	157, 205, 316
FaiI	YATR	4 cut(s)	80, 155, 203, 314
FatI	CATG	3 cut(s)	153, 201, 312
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	287, 338
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	157, 205, 316
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	151, 398
Hpy188I	TCNGA	2 cut(s)	353, 369
Hpy188III	TCNNGA	5 cut(s)	202, 232, 239, 332, 343
Hpy8I	GTNNAC	2 cut(s)	151, 398
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	228, 436
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	14, 135, 182, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	4 cut(s)	186, 320, 368, 447
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	157, 205, 316
Kzo9I	GATC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	153, 229, 252, 307, 364, 402
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	5 cut(s)	13, 103, 156, 209, 419
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	457
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	157, 205, 316
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	60, 95, 106, 187, 201, 321
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	3 cut(s)	288, 332, 341
SmoI	CTYRAG	3 cut(s)	288, 332, 341
TaaI	ACNGT	2 cut(s)	228, 436
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	150
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	170, 329
TspGWI	ACGGA	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.