Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

11805206 .. 11806249

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0088400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATCCTAGAATTTCCTTCTCCAATGACTTTGCAGACACTCAACAAGCCATCAAGCATGAAGCCATCTACAGAGAAGCTCCCGTTTCTGCAGATTTCGAGTTCTCTGTGAACAATTTCGGGATGATAGCTGCGGATGAAGTCATATTTCAGGGCACATTGTTGCCCTTGAAGGACAATGGTGCTAACCAAGGAGGGAAGACTACTTTAAGAGATGAGTTACTGGTTAATGATGATTATGGAGACATGTTTTCGAGGCCATCAAGGAGTTTAAGCCGGTGGAAAGAGCGATTGGGACTCAAAAGATCTCAGATTGTTCCTAAGAAAACAGATAGGAGTCATGGGGGTCTGGAAAGTATAGTGGAAGATAGAAGGCATGTGTTTGTTCATGAGGCTGTACTTGTTAGCAAGGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.8

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	2 cut(s)	80, 131
AluI	AGCT	2 cut(s)	80, 131
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	59, 74, 268
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	9, 418
BfmI	CTRYAG	2 cut(s)	70, 90
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	129, 142
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	4, 305
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	4, 305
BssT1I	CCWWGG	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	309, 321
BstF5I	GGATG	2 cut(s)	129, 142
BstKTI	GATC	2 cut(s)	7, 308
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	4, 305
BstNSI	RCATGY	2 cut(s)	250, 380
BstSFI	CTRYAG	2 cut(s)	70, 90
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	4, 305
BstYI	RGATCY	2 cut(s)	4, 305
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	129, 142
CciI	TCATGA	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	5 cut(s)	59, 247, 341, 377, 389
CviJI	RGCY	7 cut(s)	50, 65, 80, 131, 259, 276, 395
CviKI_1	RGCY	7 cut(s)	50, 65, 80, 131, 259, 276, 395
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	309, 321
DpnI	GATC	2 cut(s)	6, 307
DpnII	GATC	2 cut(s)	4, 305
Eco130I	CCWWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	5 cut(s)	62, 250, 344, 380, 392
FaiI	YATR	8 cut(s)	60, 146, 240, 248, 342, 359, 378, 390
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	5 cut(s)	58, 246, 340, 376, 388
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	136, 149
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	9, 418
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	5 cut(s)	62, 250, 344, 380, 392
HinfI	GANTC	2 cut(s)	297, 337
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	121, 350, 389
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	28, 166, 366
HpyCH4V	TGCA	2 cut(s)	35, 92
HpyF3I	CTNAG	2 cut(s)	309, 321
Hsp92II	CATG	5 cut(s)	62, 250, 344, 380, 392
Kzo9I	GATC	2 cut(s)	4, 305
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	137, 209, 290, 335
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	9, 418
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	2 cut(s)	6, 307
MboI	GATC	2 cut(s)	4, 305
MboII	GAAGA	2 cut(s)	211, 377
MflI	RGATCY	2 cut(s)	4, 305
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	12, 115
MlyI	GAGTC	2 cut(s)	291, 346
MnlI	CCTC	3 cut(s)	188, 249, 385
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	3 cut(s)	209, 228, 272
MspI	CCGG	1 cut(s)	277
NdeII	GATC	2 cut(s)	4, 305
NlaIII	CATG	5 cut(s)	62, 250, 344, 380, 392
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	250, 380
PagI	TCATGA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	291, 345
PpsI	GAGTC	2 cut(s)	291, 345
PscI	ACATGT	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	4, 305
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	209, 228, 272
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	4, 305
SchI	GAGTC	2 cut(s)	291, 346
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	3 cut(s)	82, 133, 419
SfcI	CTRYAG	2 cut(s)	70, 90
Sse9I	AATT	2 cut(s)	12, 115
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	9, 418
StyI	CCWWGG	1 cut(s)	190
TaqI	TCGA	2 cut(s)	99, 254
TasI	AATT	2 cut(s)	12, 115
TatI	WGTACW	1 cut(s)	397
Tru1I	TTAA	3 cut(s)	209, 228, 272
Tru9I	TTAA	3 cut(s)	209, 228, 272
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	75, 153, 377
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	2 cut(s)	250, 380
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	9, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.