Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00540

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

33469 .. 35194

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

GAGTTCCAACACATTCTGTGTGTTCTGAAGAATCTGAACACCAATGTGGATGGAAATCAGAAGATCATGTTCACTCTGACCTCCATCAAGGGTATCGGTCGCTATTTAGCCAACATCGTCTGCAAGAAGGTCGACATCAACATGAACAAGAGTGAGCCAACTGCTGCCAAAATTGATAACCTGATGTACATTGTGGGAAATCCCCGCCAGTTCAAGATCCCTGACTGGTTTCTCAACACAAAGAAGGATTACAAGGATGATCCACTTGAGATTTGGCAAGCATTGGCTGATCGATTTGCTCACCAGAAAACCATTGTTCTATCTAGAGCACGATATGAATGGACGCATTTTGCGCCTTCAAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

122

Amino Acids

14.21

Weight (kDa)

9.42

Isoelectric Point (pI)

6.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	12 - 87	2.1e-18	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	211, 254
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	214, 360
AleI	CACNNNNGTG	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	211, 254
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	44, 92
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	208, 230
Bse8I	GATNNNNATC	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	292
BseGI	GGATG	2 cut(s)	55, 262
BseJI	GATNNNNATC	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	208, 230
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	63, 216, 259, 289
BspACI	CCGC	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	292
BspPI	GGATC	2 cut(s)	211, 254
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	208, 230
BssMI	GATC	4 cut(s)	63, 216, 259, 289
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	55, 262
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	66, 219, 262, 292
BstMBI	GATC	4 cut(s)	63, 216, 259, 289
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	292
BsuTUI	ATCGAT	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	55, 262
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	292
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	67, 142
CviJI	RGCY	3 cut(s)	110, 157, 287
CviKI_1	RGCY	3 cut(s)	110, 157, 287
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	4 cut(s)	65, 218, 261, 291
DpnII	GATC	4 cut(s)	63, 216, 259, 289
Eco57I	CTGAAG	1 cut(s)	47
FaeI	CATG	2 cut(s)	70, 145
FaiI	YATR	3 cut(s)	68, 143, 336
FatI	CATG	2 cut(s)	66, 141
FauI	CCCGC	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	62, 269
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	165
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	70, 145
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	72, 133
Hpy188I	TCNGA	4 cut(s)	27, 36, 60, 78
Hpy188III	TCNNGA	2 cut(s)	214, 324
Hpy8I	GTNNAC	2 cut(s)	72, 133
HpyAV	CCTTC	3 cut(s)	121, 238, 366
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	70, 145
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	63, 216, 259, 289
LpnPI	CCDG	5 cut(s)	194, 211, 221, 234, 317
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	324
MalI	GATC	4 cut(s)	65, 218, 261, 291
MboI	GATC	4 cut(s)	63, 216, 259, 289
MboII	GAAGA	2 cut(s)	40, 73
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	2 cut(s)	44, 140
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	4 cut(s)	63, 216, 259, 289
NlaIII	CATG	2 cut(s)	70, 145
OliI	CACNNNNGTG	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	44, 140
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	63, 216, 259, 289
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	3 cut(s)	83, 132, 183
SmiMI	CAYNNNNRTG	2 cut(s)	44, 140
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	324
TaqI	TCGA	2 cut(s)	132, 292
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	158, 351
XbaI	TCTAGA	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.