Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

40365447 .. 40367525

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCTCTCGTGGCAAACGAGGAGTTCCAGCACATTCTGCGTGTTCTGAACACCAACGTCGATGGAAAGCAGAAGATCATGTTCGCTCTCACCTCCATCAAGGGTATCGGTCGCCGTTTAGCCAACATCGTCTGCAAGAAGGCCGACGTCGACATGAACAAGAGTTTGATTTTACTCAATCGGATGCTTATATTAGAAAATATGATTGGCCGTAACCTTAGGGCTGGTGAGCTGTCTGCTCAGGAGATTGAGAACCTGATGTACATTGTGAGTAATCCCCGCCAGTTCAAGATCCCTGACTGGTTTCTCAACAGAAAGAAGGATTACAAGGATGGTAAATATTCCCAGGTCGTTGCCAATGCCTTGGATATGAAACTCAGGGATGATCTCGAGAGGCTCAAGAAGATCAGGAATCACCGTGGTCTTCGACACTACTGGGGCCTTCGCGTGCGTGGACAGCACACCAAGACCACTGGCCGTAGGGGGAAGACTGTTGGTGTGTCCAAGAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

171

Amino Acids

19.89

Weight (kDa)

10.57

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 56	1.1e-12	Ribosomal protein S13/S18
Ribosomal_S13	PF00416	63 - 161	9.8e-38	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	280
AclI	AACGTT	1 cut(s)	511
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	208, 475
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	4 cut(s)	141, 208, 439, 475
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	82, 239, 407
AvaI	CYCGRG	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	218
BauI	CACGAG	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	416, 494
BccI	CCATC	3 cut(s)	56, 104, 326
BceAI	ACGGC	3 cut(s)	99, 195, 462
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	2 cut(s)	416, 494
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	345, 363, 418
Bse1I	ACTGG	4 cut(s)	283, 305, 440, 478
Bse21I	CCTNAGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	345, 363, 418
BseGI	GGATG	3 cut(s)	189, 337, 388
BseMII	CTCAG	2 cut(s)	254, 391
BseNI	ACTGG	4 cut(s)	283, 305, 440, 478
BseRI	GAGGAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	447
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	143, 210, 441, 477
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	143, 210, 441, 477
BsoBI	CYCGRG	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	75, 291, 385, 405
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	4 cut(s)	143, 210, 441, 477
BspCNI	CTCAG	2 cut(s)	253, 390
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	4 cut(s)	283, 305, 440, 478
BssECI	CCNNGG	3 cut(s)	345, 363, 418
BssMI	GATC	4 cut(s)	75, 291, 385, 405
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	419, 493
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	218, 240, 377
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	189, 337, 388
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	4 cut(s)	78, 294, 388, 408
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	75, 291, 385, 405
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 457
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	447
BstV2I	GAAGAC	2 cut(s)	416, 494
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	143, 210, 441, 477
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	189, 337, 388
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	79, 154
CviJI	RGCY	8 cut(s)	122, 143, 210, 224, 232, 397, 441, 477
CviKI_1	RGCY	8 cut(s)	122, 143, 210, 224, 232, 397, 441, 477
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	218, 240, 377
DpnI	GATC	4 cut(s)	77, 293, 387, 407
DpnII	GATC	4 cut(s)	75, 291, 385, 405
EaeI	YGGCCR	2 cut(s)	208, 475
Eco130I	CCWWGG	1 cut(s)	363
Eco81I	CCTNAGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	82, 157
FaiI	YATR	5 cut(s)	80, 155, 191, 203, 371
FatI	CATG	2 cut(s)	78, 153
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	3 cut(s)	196, 344, 395
HaeIII	GGCC	4 cut(s)	143, 210, 441, 477
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	82, 157
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	3 cut(s)	82, 239, 407
Hpy166II	GTNNAC	2 cut(s)	151, 455
Hpy188I	TCNGA	2 cut(s)	48, 183
Hpy188III	TCNNGA	6 cut(s)	242, 289, 389, 391, 400, 409
Hpy8I	GTNNAC	2 cut(s)	151, 455
Hpy99I	CGWCG	3 cut(s)	62, 149, 152
HpyAV	CCTTC	3 cut(s)	133, 313, 452
HpyCH4III	ACNGT	2 cut(s)	419, 493
HpyCH4IV	ACGT	3 cut(s)	57, 147, 511
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 457
HpyF3I	CTNAG	3 cut(s)	218, 240, 377
HpySE526I	ACGT	3 cut(s)	57, 147, 511
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	82, 157
Kzo9I	GATC	4 cut(s)	75, 291, 385, 405
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	3 cut(s)	57, 147, 511
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	77, 293, 387, 407
MboI	GATC	4 cut(s)	75, 291, 385, 405
MboII	GAAGA	4 cut(s)	85, 415, 416, 499
MflI	RGATCY	1 cut(s)	291
MnlI	CCTC	3 cut(s)	13, 103, 387
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	37, 457
NdeII	GATC	4 cut(s)	75, 291, 385, 405
NlaIII	CATG	2 cut(s)	82, 157
NlaIV	GGNNCC	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	412
Psp1406I	AACGTT	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	439
PsrI	GAACNNNNNNTAC	2 cut(s)	245, 277
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	75, 291, 385, 405
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	8 cut(s)	60, 95, 150, 219, 234, 258, 351, 514
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	389, 398
SmoI	CTYRAG	2 cut(s)	389, 398
SsiI	CCGC	1 cut(s)	280
SspI	AATATT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	419, 493
TaiI	ACGT	3 cut(s)	60, 150, 514
TaqI	TCGA	4 cut(s)	60, 150, 390, 427
TaqII	GACCGA	1 cut(s)	98
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	170, 386
TspRI	CASTG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.