Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

17201712 .. 17201900

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1071000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGATAGCAGAAGATCATGTTTCGCCCTTACCTCTATCAAGGGTATCGGTAGACGTTTCGCCAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAACTATTTGCTACCGAGCTTGACAATCTGATGACTATTGTGGCATACCCCCACCAGTTCAAGATACAAGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

63

Amino Acids

7.06

Weight (kDa)

9.51

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	4 - 62	8.1e-15	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	52, 90
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	122
BccI	CCATC	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	188
CviAII	CATG	2 cut(s)	18, 94
CviJI	RGCY	3 cut(s)	83, 107, 130
CviKI_1	RGCY	3 cut(s)	83, 107, 130
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
FaeI	CATG	2 cut(s)	21, 97
FaiI	YATR	3 cut(s)	19, 95, 157
FatI	CATG	2 cut(s)	17, 93
FblI	GTMKAC	2 cut(s)	52, 90
Hin1II	CATG	2 cut(s)	21, 97
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	53, 91, 113
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	3 cut(s)	53, 91, 113
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	21, 97
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	93, 179
MaeII	ACGT	1 cut(s)	55
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	24
MnlI	CCTC	1 cut(s)	43
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	21, 97
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	14
SetI	ASST	3 cut(s)	35, 58, 132
SgeI	CNNG	9 cut(s)	30, 52, 88, 106, 120, 139, 143, 178, 184
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	110
XmiI	GTMKAC	2 cut(s)	52, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.