Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

34854018 .. 34855697

Gene Structure 1680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1262600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTGGTAGCGAACGAAGAGTTCCAGCACATTCTGCGTGTGCTGAACACGAATGTGGACGGGAAGCAGAAGATTATGTTTGCCCTGACCTCCATCAAAGGTATCGGCCGCCGTTTCGCCAACATTGTCTGCAAGAAGGCAGACGTCGACATGAACAAGAGAGCTGGTGAACTGTCTGCTGCGGAGCTTGATACCCTCATGACGATTGTTGCGAATCCTCGCCAGTTCAAAATTCCGGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGGAGGTACTCTCAAGTTGTTTCCAATGCACTGGACATGAAGCTGAGGGATGACCTTGAGCGCTTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGGGTGCGTGGGCAGCACACCAAGACCACCGGTCGCAGAGGAAAGACCGTTGGTGTCTCCAAGAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

17.59

Weight (kDa)

10.64

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	2.1e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	112, 185
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	284
AfeI	AGCGCT	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	232, 253, 343
AhdI	GACNNNNNGTC	1 cut(s)	417
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	3 cut(s)	167, 190, 319
AluI	AGCT	3 cut(s)	167, 190, 319
Alw26I	GTCTC	4 cut(s)	9, 371, 389, 448
Aor13HI	TCCGGA	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	182, 400
ApoI	RAATTY	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	169, 412
BccI	CCATC	2 cut(s)	104, 269
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	4 cut(s)	9, 371, 389, 448
BfoI	RGCGCY	1 cut(s)	340
BisI	GCNGC	3 cut(s)	112, 183, 401
BlsI	GCNGC	3 cut(s)	113, 184, 402
Bme1390I	CCNGG	1 cut(s)	389
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	273, 353
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	371, 389
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	2 cut(s)	238, 416
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	4 cut(s)	226, 248, 312, 383
BseAI	TCCGGA	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	280, 331
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	4 cut(s)	226, 248, 312, 383
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	169, 412
Bsh1285I	CGRYCG	2 cut(s)	112, 421
BshFI	GGCC	1 cut(s)	111
BshTI	ACCGGT	1 cut(s)	416
BsiEI	CGRYCG	2 cut(s)	112, 421
BsiSI	CCGG	3 cut(s)	239, 388, 417
BsmAI	GTCTC	4 cut(s)	9, 371, 389, 448
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	2 cut(s)	371, 389
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	112, 185
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	312
BspEI	TCCGGA	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	201
BspTNI	GGTCTC	2 cut(s)	371, 389
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	226, 248, 312, 383
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	177, 362, 436
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	280, 331
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	4 cut(s)	9, 371, 389, 448
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	2 cut(s)	112, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 400
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	169, 412
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	280, 331
BtsIMutI	CAGTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	283
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	3 cut(s)	154, 202, 313
CviJI	RGCY	4 cut(s)	111, 167, 190, 319
CviKI_1	RGCY	4 cut(s)	111, 167, 190, 319
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DriI	GACNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	109
Eco31I	GGTCTC	2 cut(s)	371, 389
Eco47III	AGCGCT	1 cut(s)	338
Eco52I	CGGCCG	1 cut(s)	109
FaeI	CATG	3 cut(s)	157, 205, 316
FaiI	YATR	4 cut(s)	80, 155, 203, 314
FatI	CATG	3 cut(s)	153, 201, 312
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	112, 183, 401
FokI	GGATG	2 cut(s)	287, 338
Fsp4HI	GCNGC	3 cut(s)	112, 183, 401
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	112, 183, 401
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	3 cut(s)	239, 388, 417
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	157, 205, 316
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	239, 388, 417
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	61, 151, 173
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	2 cut(s)	202, 239
Hpy8I	GTNNAC	3 cut(s)	61, 151, 173
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	133, 256
HpyCH4III	ACNGT	3 cut(s)	177, 362, 436
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	135, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 400
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	157, 205, 316
HspAI	GCGC	1 cut(s)	337
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	169, 412
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	5 cut(s)	32, 85, 271, 355, 358
MluCI	AATT	1 cut(s)	234
MnlI	CCTC	6 cut(s)	103, 209, 231, 273, 315, 419
MroI	TCCGGA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	3 cut(s)	239, 388, 417
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	37, 400
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	157, 205, 316
NmuCI	GTSAC	1 cut(s)	371
OliI	CACNNNNGTG	1 cut(s)	56
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	113, 184, 402
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	56
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	3 cut(s)	112, 183, 401
Sau3AI	GATC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	8 cut(s)	95, 106, 150, 169, 192, 284, 321, 333
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	288, 332
SmoI	CTYRAG	2 cut(s)	288, 332
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	112, 185
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	177, 362, 436
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	234
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	182, 400
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	170, 329
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.