Rmu_ssc0000042.1_g000046

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000042.1
Physical Location & Seq
Reverse (-)
278750 .. 279065
316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000042.1_g000046.1.cds

Sequence Viewer

Length: 225 bp
atgaacgccgtcgagcaggtgatggaggtgatgcacgcgccgtctctcgttgtgaacgtggagttggagcacattctgcgtgttctgaacaccaatgtgaatggaaatcagaagatcatgttcgctctgacctccatcaagggtatcggtcgccgtttagccaacatcgtctgtaagaaggccgacattgacatgaacaagaggttcgtctttttatttttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.43

Weight (kDa)

9.51

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AccII CGCG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AleI CACNNNNGTG 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 48
AoxI GGCC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 31, 40
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 16, 143
BceAI ACGGC 2 cut(s) 25, 138
BcoDI GTCTC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 7
BmsI GCATC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 114
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 7
BssMI GATC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 36
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstUI CGCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 182
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 40
CviAII CATG 2 cut(s) 118, 193
CviJI RGCY 2 cut(s) 161, 182
CviKI_1 RGCY 2 cut(s) 161, 182
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 2 cut(s) 121, 196
FaiI YATR 2 cut(s) 119, 194
FatI CATG 2 cut(s) 117, 192
GlaI GCGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 121, 196
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HphI GGTGA 2 cut(s) 31, 40
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 87, 111, 129
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 121, 196
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 1 cut(s) 2
LweI GCATC 1 cut(s) 21
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 19, 142, 195
MslI CAYNNNNRTG 2 cut(s) 95, 191
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 121, 196
OliI CACNNNNGTG 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 54
RseI CAYNNNNRTG 2 cut(s) 95, 191
Sau3AI GATC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 21, 30, 60, 134, 206
SfaNI GCATC 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 95, 191
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 17, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.