Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

21011896 .. 21014402

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATTAATTTGGCTTGGAAAGAAAAGAAAAATAACGCATTTATCATGGGCTGGGCCCTAAGCCCAAAAGATAGGTACCCATTTTTGTTTGGAGTATATAAATCATTCATCAAGTACCCGGCGCCTAAAATTAGGGTTCGCAACGCTGCTAGGCTTCTGTCTTCACGCTCACACAGGCAAAGAGCTGCACAAAAAGCTTCAAGATCTAAACCCCTAGCCATGTCTCTGGTAGCGAACGAAGAATTTCAGCACATTCTGCGTGTGCTCAACACAAATGTTGACGGCAAGAAGAAGATCATGTTTGCCCTAACCTCCATCAAAGGTATCGGTCGTCGTTTCGCCAACATTGTCTGCAAGAAGGCCGATGTCGACATGAACAAGAGAGCTGGAGAACTCTCTGCTGCGGAGCTTGATAACCTCATGACCATTGTGGCGAATCCTCGCCAGTTCAAAATTCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGGAGGTATTCTCAAGTTGTTTCCAATGCATTGGACATGAAGCTGAGGGATGACCTCGAACGCCTGAAGAAGATCAGGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGGGTACGTGGGCAGCACACCAAGACTACCGGACGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

226

Amino Acids

26.07

Weight (kDa)

11.07

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	2 cut(s)	75, 121
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	242, 453
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	3 cut(s)	77, 116, 612
AfiI	CCNNNNNNNGG	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	201, 451, 472
AluBI	AGCT	5 cut(s)	185, 197, 386, 409, 538
AluI	AGCT	5 cut(s)	185, 197, 386, 409, 538
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	4 cut(s)	228, 590, 608, 667
AoxI	GGCC	2 cut(s)	54, 360
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	4 cut(s)	146, 185, 401, 619
ApoI	RAATTY	2 cut(s)	242, 453
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	54, 55
AsuC2I	CCSGG	2 cut(s)	119, 608
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	2 cut(s)	75, 121
BanII	GRGCYC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	133, 172, 388, 631
BccI	CCATC	2 cut(s)	323, 488
BceAI	ACGGC	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	119, 608
BcoDI	GTCTC	4 cut(s)	228, 590, 608, 667
BfaI	CTAG	2 cut(s)	150, 215
BfoI	RGCGCY	1 cut(s)	125
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	4 cut(s)	147, 186, 402, 620
BlsI	GCNGC	4 cut(s)	148, 187, 403, 621
Bme1390I	CCNGG	2 cut(s)	119, 608
BmgT120I	GGNCC	2 cut(s)	54, 55
BmiI	GGNNCC	4 cut(s)	56, 77, 123, 575
BmrFI	CCNGG	2 cut(s)	119, 608
BmrI	ACTGGG	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	2 cut(s)	59, 539
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	119, 608
BsaAI	YACGTR	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	2 cut(s)	590, 608
BsaJI	CCNNGG	1 cut(s)	580
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	642
Bse1I	ACTGG	3 cut(s)	445, 467, 602
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	2 cut(s)	499, 550
BseLI	CCNNNNNNNGG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	3 cut(s)	445, 467, 602
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	4 cut(s)	133, 172, 388, 631
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	56, 362
BshNI	GGYRCC	2 cut(s)	75, 121
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	119, 607, 636
BslI	CCNNNNNNNGG	1 cut(s)	642
BsmAI	GTCTC	4 cut(s)	228, 590, 608, 667
BsnI	GGCC	2 cut(s)	56, 362
Bso31I	GGTCTC	2 cut(s)	590, 608
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 267
Bsp143I	GATC	3 cut(s)	203, 294, 567
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	56, 362
BspCNI	CTCAG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	56, 77, 123, 575
BspT107I	GGYRCC	2 cut(s)	75, 121
BspTNI	GGTCTC	2 cut(s)	590, 608
BsrI	ACTGG	3 cut(s)	445, 467, 602
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	3 cut(s)	203, 294, 567
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	581, 655
BstACI	GRCGYC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	614
BstDEI	CTNAG	2 cut(s)	59, 539
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	499, 550
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	206, 297, 570
BstMAI	GTCTC	4 cut(s)	228, 590, 608, 667
BstMBI	GATC	3 cut(s)	203, 294, 567
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 256
BstSCI	CCNGG	2 cut(s)	117, 606
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	133, 172, 388, 631
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	2 cut(s)	226, 526
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	56, 362
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	499, 550
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	54, 55
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	76, 115, 611
CviAII	CATG	6 cut(s)	46, 220, 298, 373, 421, 532
CviQI	GTAC	3 cut(s)	76, 115, 611
DdeI	CTNAG	2 cut(s)	59, 539
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	3 cut(s)	205, 296, 569
DpnII	GATC	3 cut(s)	203, 294, 567
Eco24I	GRGCYC	1 cut(s)	58
Eco31I	GGTCTC	2 cut(s)	590, 608
Eco57I	CTGAAG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	58
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
FaeI	CATG	6 cut(s)	49, 223, 301, 376, 424, 535
FaiI	YATR	8 cut(s)	47, 97, 99, 221, 299, 374, 422, 533
FatI	CATG	6 cut(s)	45, 219, 297, 372, 420, 531
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	147, 186, 402, 620
FokI	GGATG	2 cut(s)	506, 557
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	4 cut(s)	147, 186, 402, 620
FspBI	CTAG	2 cut(s)	150, 215
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	147, 186, 402, 620
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	56, 362
HapII	CCGG	3 cut(s)	119, 607, 636
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	6 cut(s)	49, 223, 301, 376, 424, 535
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	280, 370
HindII	GTYRAC	2 cut(s)	280, 370
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	119, 607, 636
Hpy166II	GTNNAC	2 cut(s)	280, 370
Hpy188III	TCNNGA	4 cut(s)	201, 421, 458, 571
Hpy8I	GTNNAC	2 cut(s)	280, 370
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	352, 475
HpyCH4III	ACNGT	2 cut(s)	581, 655
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	3 cut(s)	188, 354, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 256
HpyF3I	CTNAG	2 cut(s)	59, 539
HpySE526I	ACGT	1 cut(s)	613
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	6 cut(s)	49, 223, 301, 376, 424, 535
HspAI	GCGC	1 cut(s)	122
KasI	GGCGCC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	203, 294, 567
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	4 cut(s)	133, 172, 388, 631
MaeI	CTAG	2 cut(s)	150, 215
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	3 cut(s)	205, 296, 569
MboI	GATC	3 cut(s)	203, 294, 567
MboII	GAAGA	7 cut(s)	153, 251, 301, 304, 490, 574, 577
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	58, 267
MluCI	AATT	4 cut(s)	7, 129, 242, 453
Mly113I	GGCGCC	1 cut(s)	122
MnlI	CCTC	6 cut(s)	322, 428, 450, 492, 534, 560
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	6
MspI	CCGG	3 cut(s)	119, 607, 636
MspR9I	CCNGG	2 cut(s)	119, 608
MwoI	GCNNNNNNNGC	2 cut(s)	194, 256
NarI	GGCGCC	1 cut(s)	122
NciI	CCSGG	2 cut(s)	119, 608
NdeII	GATC	3 cut(s)	203, 294, 567
NlaIII	CATG	6 cut(s)	49, 223, 301, 376, 424, 535
NlaIV	GGNNCC	4 cut(s)	56, 77, 123, 575
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	526
PagI	TCATGA	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	148, 187, 403, 621
PluTI	GGCGCC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	614
PshBI	ATTAAT	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	56, 77, 123, 575
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	54, 55
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	3 cut(s)	77, 116, 612
RsaNI	GTAC	3 cut(s)	76, 115, 611
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	147, 186, 402, 620
Sau3AI	GATC	3 cut(s)	203, 294, 567
Sau96I	GGNCC	2 cut(s)	54, 55
ScrFI	CCNGG	2 cut(s)	119, 608
SduI	GDGCHC	2 cut(s)	58, 267
SfoI	GGCGCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	4 cut(s)	7, 129, 242, 453
SsiI	CCGC	1 cut(s)	404
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	150, 215
StyD4I	CCNGG	2 cut(s)	117, 606
TaaI	ACNGT	2 cut(s)	581, 655
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	2 cut(s)	369, 552
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	7, 129, 242, 453
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	4 cut(s)	146, 185, 401, 619
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	3 cut(s)	97, 389, 548
TspGWI	ACGGA	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	2 cut(s)	242, 453
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	150, 215
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.