Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

52707859 .. 52709600

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG338200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTGGGTTTGATGTGGTTATGTCGTTGCAGAGCTGGTGAACTATCTGCTGCTGAGATTGATAACCTCATGACAATTGTTGGGAATCCTCGCCAGTTCAAAATTCCAGATTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGCAGGTATTCCCAAGTTGTTGCCAATGCTTTGGACATGAAGCTGAGAGATGATCTCGAGCGGTTGAAGAAGATCAGGAACCACCGTGGTCTTCGTCACTACTGGGGCCTTCGGGTACGTGGGCAGCACACCAAGACTACTGGTCGCAGGGGGAAGACTGTTGGTGTCTCCAAGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

108

Amino Acids

12.7

Weight (kDa)

10.81

Isoelectric Point (pI)

17.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	10 - 98	8.4e-37	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	100, 121, 211
AhdI	GACNNNNNGTC	1 cut(s)	285
AluBI	AGCT	2 cut(s)	35, 187
AluI	AGCT	2 cut(s)	35, 187
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	50, 268
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbsI	GAAGAC	2 cut(s)	227, 305
BbvI	GCAGC	2 cut(s)	37, 280
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	51, 269
BlsI	GCNGC	2 cut(s)	52, 270
BmeRI	GACNNNNNGTC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	224, 251
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BpiI	GAAGAC	2 cut(s)	227, 305
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	94, 251, 289
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	45, 179
BseNI	ACTGG	3 cut(s)	94, 251, 289
BseXI	GCAGC	2 cut(s)	37, 280
BshFI	GGCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	196, 216
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	46, 180
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	224, 251
BspMI	ACCTGC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	94, 251, 289
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	196, 216
Bst4CI	ACNGT	2 cut(s)	230, 304
BstBAI	YACGTR	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	54, 188
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	199, 219
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	196, 216
BstV1I	GCAGC	2 cut(s)	37, 280
BstV2I	GAAGAC	2 cut(s)	227, 305
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	70, 181
CviJI	RGCY	3 cut(s)	35, 187, 252
CviKI_1	RGCY	3 cut(s)	35, 187, 252
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	54, 188
DpnI	GATC	2 cut(s)	198, 218
DpnII	GATC	2 cut(s)	196, 216
DriI	GACNNNNNGTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	250
FaeI	CATG	2 cut(s)	73, 184
FaiI	YATR	3 cut(s)	22, 71, 182
FatI	CATG	2 cut(s)	69, 180
Fnu4HI	GCNGC	2 cut(s)	51, 269
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	51, 269
GluI	GCNGC	2 cut(s)	51, 269
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	73, 184
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	4 cut(s)	70, 107, 200, 220
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	124, 263
HpyCH4III	ACNGT	2 cut(s)	230, 304
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	54, 188
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	73, 184
Kzo9I	GATC	2 cut(s)	196, 216
LpnPI	CCDG	9 cut(s)	21, 107, 109, 120, 133, 205, 232, 270, 277
Lsp1109I	GCAGC	2 cut(s)	37, 280
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	198, 218
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	196, 216
MboII	GAAGA	5 cut(s)	139, 223, 226, 227, 310
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	2 cut(s)	75, 102
MnlI	CCTC	2 cut(s)	77, 99
MunI	CAATTG	1 cut(s)	75
NdeII	GATC	2 cut(s)	196, 216
NlaIII	CATG	2 cut(s)	73, 184
NlaIV	GGNNCC	2 cut(s)	224, 251
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	52, 270
Ppu21I	YACGTR	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	224, 251
PspPI	GGNCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	51, 269
Sau3AI	GATC	2 cut(s)	196, 216
Sau96I	GGNCC	1 cut(s)	250
SetI	ASST	5 cut(s)	37, 69, 152, 189, 265
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	75, 102
SsiI	CCGC	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	230, 304
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	75, 102
TfiI	GAWTC	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	50, 268
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	197
XapI	RAATTY	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.