Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

24577843 .. 24580818

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGATGAAACTGTGGAGAAAATCTGAAAATGAAGGTGATGGAGTCTCTCGTCGCGAACGAGAGTTGCAGCACATTTTGCGTGTTCTGAACACCAATGTGGATGGAAATCAGAAGATCATGTTCGCTCTGACCTCCATCAAGGGTATCGGTTGCCGTTTAGCCAACATCGTCTGCAAGAAGGCCGATGTCGACATGAACAGGAGATACAGATGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

72

Amino Acids

8.37

Weight (kDa)

9.93

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	27 - 69	1e-12	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	54
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	67, 213
AsuHPI	GGTGA	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	32, 95, 143
BceAI	ACGGC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	68, 214
BlsI	GCNGC	2 cut(s)	69, 215
BmsI	GCATC	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	105
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	114
Bsp68I	TCGCGA	1 cut(s)	54
BspANI	GGCC	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	54
BssMI	GATC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	106
BtuMI	TCGCGA	1 cut(s)	54
CviAII	CATG	2 cut(s)	118, 193
CviJI	RGCY	3 cut(s)	161, 182, 216
CviKI_1	RGCY	3 cut(s)	161, 182, 216
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
FaeI	CATG	2 cut(s)	121, 196
FaiI	YATR	2 cut(s)	119, 194
FatI	CATG	2 cut(s)	117, 192
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	68, 214
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	68, 214
FspBI	CTAG	1 cut(s)	217
GluI	GCNGC	2 cut(s)	68, 214
HaeIII	GGCC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	121, 196
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	25, 87, 111, 129
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	26, 172
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	67, 174, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	121, 196
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	217
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	121, 196
NruI	TCGCGA	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	69, 215
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	1 cut(s)	188
RruI	TCGCGA	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	2 cut(s)	68, 214
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	51
SetI	ASST	3 cut(s)	37, 134, 218
SfaNI	GCATC	1 cut(s)	200
SgeI	CNNG	9 cut(s)	60, 65, 71, 92, 130, 151, 187, 205, 211
SmiMI	CAYNNNNRTG	1 cut(s)	95
SspMI	CTAG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	189
TseI	GCWGC	2 cut(s)	67, 213
TspDTI	ATGAA	3 cut(s)	20, 45, 209
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.