Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

52556784 .. 52558126

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG324900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCGAAAGCTAAAGAAAATAGTTGGGCCATTTTGGATGGGCTAAATCTTATAATGGGGTCAGACCTTGGCCCGTGGAGAGCTGGTGAACTATCGGCTGCTGAGATTGATAACCTCATGACAATTGTTGGGAATCCTCGCCAGTTCAAAATTCCAGATTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGCAGGTATTCCCAAGTTGTTGCCAATGCTTTGGACATGAAGCTGAGAGATGATCTCGAGCGGTTGAAGAAGATCAGGAACCACCGTGGTCTTCGTCACTACTGGGGCCTTCGGGTACGTGGGCAGCACACCAAGACTACTGGTCGCAGGGGAAAGACCGTTGGTGTTTCCAAGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

124

Amino Acids

14.33

Weight (kDa)

10.56

Isoelectric Point (pI)

19.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	27 - 114	1.2e-36	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	253
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	148, 169, 259
AhdI	GACNNNNNGTC	1 cut(s)	333
AluBI	AGCT	3 cut(s)	11, 83, 235
AluI	AGCT	3 cut(s)	11, 83, 235
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	27, 70, 298
ApeKI	GCWGC	2 cut(s)	98, 316
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	3 cut(s)	27, 71, 298
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	85, 328
BccI	CCATC	2 cut(s)	32, 185
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	2 cut(s)	99, 317
BlsI	GCNGC	2 cut(s)	100, 318
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	27, 71, 298
BmiI	GGNNCC	2 cut(s)	272, 299
BmrI	ACTGGG	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	67, 74, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bse1I	ACTGG	3 cut(s)	142, 299, 337
BseDI	CCNNGG	3 cut(s)	67, 74, 277
BseGI	GGATG	2 cut(s)	43, 196
BseMII	CTCAG	2 cut(s)	93, 227
BseNI	ACTGG	3 cut(s)	142, 299, 337
BseXI	GCAGC	2 cut(s)	85, 328
BshFI	GGCC	3 cut(s)	29, 72, 300
BsiHKCI	CYCGRG	1 cut(s)	248
BsnI	GGCC	3 cut(s)	29, 72, 300
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	244, 264
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	29, 72, 300
BspCNI	CTCAG	2 cut(s)	94, 228
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	272, 299
BspMI	ACCTGC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	142, 299, 337
BssECI	CCNNGG	3 cut(s)	67, 74, 277
BssMI	GATC	2 cut(s)	244, 264
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	278, 352
BstBAI	YACGTR	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	102, 236
BstDSI	CCRYGG	2 cut(s)	74, 277
BstF5I	GGATG	2 cut(s)	43, 196
BstKTI	GATC	2 cut(s)	247, 267
BstMBI	GATC	2 cut(s)	244, 264
BstV1I	GCAGC	2 cut(s)	85, 328
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	29, 72, 300
BtgI	CCRYGG	2 cut(s)	74, 277
BtsCI	GGATG	2 cut(s)	43, 196
BveI	ACCTGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	27, 71, 298
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	2 cut(s)	118, 229
CviJI	RGCY	8 cut(s)	11, 29, 43, 72, 83, 98, 235, 300
CviKI_1	RGCY	8 cut(s)	11, 29, 43, 72, 83, 98, 235, 300
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	102, 236
DpnI	GATC	2 cut(s)	246, 266
DpnII	GATC	2 cut(s)	244, 264
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	121, 232
FaiI	YATR	3 cut(s)	53, 119, 230
FatI	CATG	2 cut(s)	117, 228
Fnu4HI	GCNGC	2 cut(s)	99, 317
FokI	GGATG	2 cut(s)	50, 203
Fsp4HI	GCNGC	2 cut(s)	99, 317
GluI	GCNGC	2 cut(s)	99, 317
HaeIII	GGCC	3 cut(s)	29, 72, 300
Hin1II	CATG	2 cut(s)	121, 232
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	118, 155, 248, 268
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	172, 311
HpyCH4III	ACNGT	2 cut(s)	278, 352
HpyCH4IV	ACGT	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	102, 236
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	121, 232
Kzo9I	GATC	2 cut(s)	244, 264
LpnPI	CCDG	9 cut(s)	69, 155, 157, 168, 181, 253, 280, 318, 325
Lsp1109I	GCAGC	2 cut(s)	85, 328
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	246, 266
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	2 cut(s)	244, 264
MboII	GAAGA	4 cut(s)	187, 271, 274, 275
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	2 cut(s)	123, 150
MnlI	CCTC	2 cut(s)	125, 147
MunI	CAATTG	1 cut(s)	123
NdeII	GATC	2 cut(s)	244, 264
NlaIII	CATG	2 cut(s)	121, 232
NlaIV	GGNNCC	2 cut(s)	272, 299
NmuCI	GTSAC	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	100, 318
Ppu21I	YACGTR	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	272, 299
PspPI	GGNCC	3 cut(s)	27, 71, 298
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SatI	GCNGC	2 cut(s)	99, 317
Sau3AI	GATC	2 cut(s)	244, 264
Sau96I	GGNCC	3 cut(s)	27, 71, 298
SetI	ASST	7 cut(s)	13, 69, 85, 117, 200, 237, 313
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	123, 150
SsiI	CCGC	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	278, 352
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	123, 150
TfiI	GAWTC	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	98, 316
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	245
XapI	RAATTY	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.