Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

16936671 .. 16936999

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAAAGCAGAAGATCATGTTTCGTCATTACCTCCATCAAGGGTATATGTAGACGTTTCGGCGACATCGTCTATAAGAAGGCCGATGTCAACATGAACAAAAGGGTTGGTGAGCTATCTACTACCGAGCTCGACAATCTAATGACTATTATGGACTACAAGGATGGTAAATATTCCCAGGTGGTCTACAAGGATGGATATTATGGTGTTTCGGTGTTCATCATTTCCAACTTACTCTCTTCATTCCCATTCTTGGTTGCAATTACTCTTATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

93

Amino Acids

10.49

Weight (kDa)

8.95

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	52, 186
AfiI	CCNNNNNNNGG	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	115, 130
AluI	AGCT	2 cut(s)	115, 130
Alw21I	GWGCWC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	3 cut(s)	44, 158, 188
BciT130I	CCWGG	1 cut(s)	179
BfaI	CTAG	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	169, 199
BseLI	CCNNNNNNNGG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	253
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	169, 199
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	169, 199
CviAII	CATG	2 cut(s)	18, 94
CviJI	RGCY	3 cut(s)	83, 115, 130
CviKI_1	RGCY	3 cut(s)	83, 115, 130
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	21, 97
FaiI	YATR	7 cut(s)	19, 47, 49, 75, 95, 152, 204
FatI	CATG	2 cut(s)	17, 93
FblI	GTMKAC	2 cut(s)	52, 186
FokI	GGATG	2 cut(s)	176, 206
FriOI	GRGCYC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	21, 97
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	53, 91, 187
Hpy8I	GTNNAC	3 cut(s)	53, 91, 187
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	21, 97
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	164, 191
MaeI	CTAG	1 cut(s)	277
MaeII	ACGT	1 cut(s)	55
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	24, 231
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	21, 97
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	35, 58, 117, 132, 183
Sse9I	AATT	1 cut(s)	261
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	277
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	110, 208, 231
Tth111I	GACNNNGTC	1 cut(s)	68
XmiI	GTMKAC	2 cut(s)	52, 186
XspI	CTAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.