Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

17978247 .. 17978420

Gene Structure 174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1097100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGAAAGAAGAAGATCATGTTTCGCCATTACCTTCATCAAGGGTATCGGTAGACGTTTCGCCGACATCGTCTATAAGAAGGCTGATGTCGACATGAACAAAAGGGCTAGTGAGCTATCTGCTACCGAGCTCGACAATCTATTGACTATTGTGGCAACCCCCTCCCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

58

Amino Acids

6.42

Weight (kDa)

9.51

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	4 - 53	1.4e-11	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	52, 90
AluBI	AGCT	2 cut(s)	115, 130
AluI	AGCT	2 cut(s)	115, 130
Alw21I	GWGCWC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	14
BssMI	GATC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
CviAII	CATG	2 cut(s)	18, 94
CviJI	RGCY	4 cut(s)	83, 107, 115, 130
CviKI_1	RGCY	4 cut(s)	83, 107, 115, 130
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	21, 97
FaiI	YATR	3 cut(s)	19, 75, 95
FatI	CATG	2 cut(s)	17, 93
FblI	GTMKAC	2 cut(s)	52, 90
FriOI	GRGCYC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	21, 97
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	53, 91
Hpy8I	GTNNAC	2 cut(s)	53, 91
HpyAV	CCTTC	2 cut(s)	43, 73
HpyCH4IV	ACGT	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	21, 97
Kzo9I	GATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	55
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	21, 24
MhlI	GDGCHC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	172
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	21, 97
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	35, 58, 117, 132
SgeI	CNNG	6 cut(s)	30, 52, 106, 120, 139, 143
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	132
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	90, 132
TspDTI	ATGAA	2 cut(s)	25, 110
Tth111I	GACNNNGTC	1 cut(s)	68
XmiI	GTMKAC	2 cut(s)	52, 90
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.