Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037025.1

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2762

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 761 bp

atgaagaagcccaaaccccatatttgtagcccacaatcaagcagacctcaagcccagaaaccagaccaaagccaccgtgattaccgtcaccaccgccagaaccgctgcctcaccactccaaccaaacacagaacccttgggacaccccgccagaacccggccggagatcgatctgacatcaaatcaccaagaaactccaatccaaaaggtaaagcacccagacaagcccgatccgaacaagcaaacaccggatcgggggttttgggctttatcgccttccgctgcatctcaaatccttttaaagccatcgtcttcctcactaggtcctctctcaccaaacggcgcacacacactcacactcacacgcagagtctgagaccaaaccctaaggccgccgacgccgtaaccatgtctctcgtggcgaacgaggagttccagcacattctgcgtgttctgaacaccaacgtcgatggaaagcagaagatcatgttcgctctcacctccatcaagggtatcggtcgccgtttagccaacatcgtctgcaagaaggccgacgtcgacatgaacaagagggctggtgagctgtctgctcaggagattgataacctgatgcacattgtgagtaatccccgccagttcaagatccctgactggtttctcaacagaaagaaggattacaaggatggtaaatattcccaggtggttgccaatgccttggatatgaagctcagggatgatctcgagaggctcaagaagatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

253

Amino Acids

28.77

Weight (kDa)

10.58

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	558
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	6 cut(s)	94, 103, 148, 280, 393, 631
AclWI	GGATC	3 cut(s)	225, 259, 637
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	399, 555
AdeI	CACNNNGTG	1 cut(s)	619
AfiI	CCNNNNNNNGG	2 cut(s)	157, 255
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	2 cut(s)	583, 727
AluI	AGCT	2 cut(s)	583, 727
Alw26I	GTCTC	2 cut(s)	370, 417
AlwI	GGATC	3 cut(s)	225, 259, 637
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	740
AoxI	GGCC	3 cut(s)	159, 390, 549
ApeKI	GCWGC	2 cut(s)	105, 282
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	6 cut(s)	80, 103, 177, 325, 490, 590
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	324
AxyI	CCTNAGG	1 cut(s)	387
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	92, 269
BccI	CCATC	4 cut(s)	314, 464, 512, 677
BceAI	ACGGC	3 cut(s)	356, 386, 507
BciT130I	CCWGG	1 cut(s)	698
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	370, 417
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	3 cut(s)	106, 283, 393
BlsI	GCNGC	3 cut(s)	107, 284, 394
Bme1390I	CCNGG	2 cut(s)	158, 698
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	158, 698
BmsI	GCATC	2 cut(s)	294, 600
BpiI	GAAGAC	1 cut(s)	304
Bpu10I	CCTNAGC	2 cut(s)	591, 728
BpuEI	CTTGAG	2 cut(s)	33, 734
BpuMI	CCSGG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	169
BsaHI	GRCGYC	2 cut(s)	399, 555
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	3 cut(s)	136, 696, 714
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 255
Bse1I	ACTGG	2 cut(s)	634, 656
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	698
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	136, 696, 714
BseGI	GGATG	2 cut(s)	688, 739
BseLI	CCNNNNNNNGG	2 cut(s)	157, 255
BseMII	CTCAG	3 cut(s)	365, 605, 742
BseNI	ACTGG	2 cut(s)	634, 656
BseRI	GAGGAG	1 cut(s)	443
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	92, 269
Bsh1285I	CGRYCG	2 cut(s)	162, 520
BshFI	GGCC	3 cut(s)	161, 392, 551
BshVI	ATCGAT	1 cut(s)	169
BsiEI	CGRYCG	2 cut(s)	162, 520
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	3 cut(s)	158, 162, 249
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	157, 255
BsmAI	GTCTC	2 cut(s)	370, 417
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	161, 392, 551
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	740
Bsp143I	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
BspACI	CCGC	6 cut(s)	94, 103, 148, 280, 393, 631
BspANI	GGCC	3 cut(s)	161, 392, 551
BspCNI	CTCAG	3 cut(s)	366, 604, 741
BspDI	ATCGAT	1 cut(s)	169
BspPI	GGATC	3 cut(s)	225, 259, 637
BspTNI	GGTCTC	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	634, 656
BssECI	CCNNGG	3 cut(s)	136, 696, 714
BssMI	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
BssNI	GRCGYC	2 cut(s)	399, 555
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	136, 714
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	77, 86
BstACI	GRCGYC	2 cut(s)	399, 555
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	374, 387, 591, 728
BstF5I	GGATG	2 cut(s)	688, 739
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	8 cut(s)	169, 173, 233, 254, 486, 645, 739, 759
BstMAI	GTCTC	2 cut(s)	370, 417
BstMBI	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
BstMCI	CGRYCG	2 cut(s)	162, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 398, 445
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	156, 696
BstV1I	GCAGC	2 cut(s)	92, 269
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	642
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	642
BstZI	CGGCCG	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	161, 392, 551
BsuTUI	ATCGAT	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	688, 739
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	407
CviAII	CATG	3 cut(s)	409, 487, 562
DdeI	CTNAG	4 cut(s)	374, 387, 591, 728
DpnI	GATC	8 cut(s)	168, 172, 232, 253, 485, 644, 738, 758
DpnII	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
DraI	TTTAAA	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	136, 714
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	324
Eco52I	CGGCCG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	696
EcoT14I	CCWWGG	2 cut(s)	136, 714
ErhI	CCWWGG	2 cut(s)	136, 714
FaeI	CATG	3 cut(s)	412, 490, 565
FaiI	YATR	5 cut(s)	21, 410, 488, 563, 722
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	408, 486, 561
FauI	CCCGC	2 cut(s)	155, 638
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	106, 283, 393
FokI	GGATG	2 cut(s)	695, 746
Fsp4HI	GCNGC	3 cut(s)	106, 283, 393
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	106, 283, 393
HaeIII	GGCC	3 cut(s)	161, 392, 551
HapII	CCGG	3 cut(s)	158, 162, 249
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	2 cut(s)	399, 555
Hin1II	CATG	3 cut(s)	412, 490, 565
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	3 cut(s)	158, 162, 249
HphI	GGTGA	6 cut(s)	80, 103, 177, 325, 490, 590
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	4 cut(s)	175, 235, 375, 456
Hpy188III	TCNNGA	5 cut(s)	593, 640, 740, 742, 751
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	4 cut(s)	401, 470, 557, 560
HpyAV	CCTTC	3 cut(s)	286, 541, 664
HpyCH4III	ACNGT	2 cut(s)	77, 86
HpyCH4IV	ACGT	2 cut(s)	465, 555
HpyCH4V	TGCA	3 cut(s)	285, 543, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 398, 445
HpyF3I	CTNAG	4 cut(s)	374, 387, 591, 728
HpySE526I	ACGT	2 cut(s)	465, 555
Hsp92I	GRCGYC	2 cut(s)	399, 555
Hsp92II	CATG	3 cut(s)	412, 490, 565
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
Lsp1109I	GCAGC	2 cut(s)	92, 269
LweI	GCATC	2 cut(s)	294, 600
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	465, 555
MaeIII	GTNAC	2 cut(s)	86, 403
MalI	GATC	8 cut(s)	168, 172, 232, 253, 485, 644, 738, 758
MboI	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
MboII	GAAGA	3 cut(s)	16, 304, 493
MflI	RGATCY	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	8 cut(s)	57, 119, 326, 337, 421, 511, 564, 738
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	105, 282
MspI	CCGG	3 cut(s)	158, 162, 249
MspR9I	CCNGG	2 cut(s)	158, 698
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	3 cut(s)	102, 398, 445
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
NlaIII	CATG	3 cut(s)	412, 490, 565
NmuCI	GTSAC	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	107, 284, 394
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	106, 283, 393
Sau3AI	GATC	8 cut(s)	166, 170, 230, 251, 483, 642, 736, 756
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	158, 698
SfaNI	GCATC	2 cut(s)	294, 600
Sfr274I	CTCGAG	1 cut(s)	740
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	740
SmlI	CTYRAG	3 cut(s)	48, 740, 749
SmoI	CTYRAG	3 cut(s)	48, 740, 749
SsiI	CCGC	6 cut(s)	94, 103, 148, 280, 393, 631
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	156, 696
StyI	CCWWGG	2 cut(s)	136, 714
TaaI	ACNGT	2 cut(s)	77, 86
TaiI	ACGT	2 cut(s)	468, 558
TaqI	TCGA	4 cut(s)	169, 468, 558, 741
TaqII	GACCGA	1 cut(s)	506
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	105, 282
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	17, 578, 737
VpaK11BI	GGWCC	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.