Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

18921223 .. 18927398

Gene Structure 6176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTAAAAGCTCGCGTCTCCGTCAATATCAATGTCCTCCACCGCAAGGATTGTTTGAGACTACCGAGTCCTTCATCATCCTATGGGGGGAGTTCCAGCACATTCTGTGTGTTCTGAAGAATCTGAACACTAATGTGGATGGAAATCTGAAGATCATGTTCACTCTGACCTCCATCAAGGGTATCGGTCGCTATTTAGCCAACATCGTTTGCAAGAAGGTCGACGTCGACATGAATAAGAGCAAGGCTAGTGAGCCAACTGTTGCCAAAATTGATAACCTGATGTACATTGTGGGAAATCCCCACCAGTTCAAGATCCCTGACTATGAAGATAGGTCAGAACAGAAAACCTGCTCGGGAATTTACAAACATTTGTGGAGAACTAAAATTCCGTGGCACAAGATCGTCAATCCTAATGTTTCAAGGAAGTTAATTCAGATGAGGATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

150

Amino Acids

17.41

Weight (kDa)

9.67

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	42 - 126	6e-15	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	2 cut(s)	222, 228
AccII	CGCG	1 cut(s)	16
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	360, 387
AcuI	CTGAAG	2 cut(s)	137, 170
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	47, 88
AgsI	TTSAA	2 cut(s)	313, 423
AleI	CACNNNNGTG	1 cut(s)	134
AloI	GAACNNNNNNTCC	2 cut(s)	373, 405
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	23, 53
AlwI	GGATC	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	360, 387
AvaI	CYCGRG	1 cut(s)	355
BccI	CCATC	2 cut(s)	134, 182
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BcoDI	GTCTC	2 cut(s)	23, 53
BfaI	CTAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 88
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	78, 145
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	47, 88
BseNI	ACTGG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	47, 88
BsmAI	GTCTC	2 cut(s)	23, 53
BsmBI	CGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	153, 315, 402
BspACI	CCGC	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	153, 315, 402
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	78, 145
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	3 cut(s)	156, 318, 405
BstMAI	GTCTC	2 cut(s)	23, 53
BstMBI	GATC	3 cut(s)	153, 315, 402
BstMCI	CGRYCG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	78, 145
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	14
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	157, 232
CviJI	RGCY	4 cut(s)	12, 200, 248, 256
CviKI_1	RGCY	4 cut(s)	12, 200, 248, 256
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	155, 317, 404
DpnII	GATC	3 cut(s)	153, 315, 402
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	137, 170
Eco88I	CYCGRG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	2 cut(s)	160, 235
FaiI	YATR	4 cut(s)	85, 158, 233, 327
FatI	CATG	2 cut(s)	156, 231
FblI	GTMKAC	2 cut(s)	222, 228
FokI	GGATG	2 cut(s)	65, 152
FspBI	CTAG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	160, 235
HincII	GTYRAC	2 cut(s)	223, 229
HindII	GTYRAC	2 cut(s)	223, 229
HinfI	GANTC	2 cut(s)	68, 121
Hpy166II	GTNNAC	3 cut(s)	162, 223, 229
Hpy188I	TCNGA	6 cut(s)	117, 126, 150, 168, 340, 438
Hpy188III	TCNNGA	2 cut(s)	313, 357
Hpy8I	GTNNAC	3 cut(s)	162, 223, 229
Hpy99I	CGWCG	2 cut(s)	227, 230
HpyAV	CCTTC	2 cut(s)	82, 211
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	160, 235
Kzo9I	GATC	3 cut(s)	153, 315, 402
LpnPI	CCDG	5 cut(s)	110, 293, 320, 333, 364
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	225
MalI	GATC	3 cut(s)	155, 317, 404
MboI	GATC	3 cut(s)	153, 315, 402
MboII	GAAGA	3 cut(s)	130, 163, 341
MflI	RGATCY	1 cut(s)	315
MluCI	AATT	4 cut(s)	270, 360, 387, 432
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	48, 181, 435
MseI	TTAA	2 cut(s)	431, 447
MslI	CAYNNNNRTG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	16
NdeII	GATC	3 cut(s)	153, 315, 402
NlaIII	CATG	2 cut(s)	160, 235
OliI	CACNNNNGTG	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	134
SalI	GTCGAC	2 cut(s)	221, 227
SaqAI	TTAA	2 cut(s)	431, 447
Sau3AI	GATC	3 cut(s)	153, 315, 402
SchI	GAGTC	1 cut(s)	77
SetI	ASST	7 cut(s)	14, 173, 222, 228, 282, 338, 353
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	270, 360, 387, 432
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	222, 228
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	4 cut(s)	270, 360, 387, 432
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	431, 447
Tru9I	TTAA	2 cut(s)	431, 447
TspDTI	ATGAA	3 cut(s)	64, 248, 342
TspGWI	ACGGA	2 cut(s)	11, 381
XapI	RAATTY	2 cut(s)	360, 387
XmiI	GTMKAC	2 cut(s)	222, 228
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.