Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

11789311 .. 11797797

Gene Structure 8487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGGAAGACGAAGAAGAAGTCATCTCACTCTCCGATTCCTCCTCCGATTCCAGTTCCAGCGACGACTACACTGCCGACCCACAAGACTTGGATCTCGGAGAAGAAGAAGAAGAAGAAGACCAAGAGCTCGAAAACGAACCAGAAGTTCAAAACGACGACGTACGCGAGAATCGTCGGAGACCCAAGGCCCGCCCTCCCCTTCCGCCGCCATCCGGAAAAGATCGGAAATCGAAGAATGTCGATGCTCTCCTCAGCGGCAACCTTGTGGTGAAAAGACAGCCTCTTCTTCCACGAGTTCTGTCGGTGACGGAAGGAGCAACAGTTTGTAGGAAACCCTTTAAACCACCATGCTCCAAAGGCTATGATGATGGAAATGACCAGCTCGCTCGGCGTCTCTCAGCACGCAGACGGTTTGTTCCCTGGGGCGGTTCATCAAGTGCACCGTTTTTTCCGGTTATTGAGAGGTTTCCTAGTTTGCCAAATGATGCTGAGAAAGATGTAGTGGAAGAGATTGTGACACTGCCACCTGGAATTGATCCCTTGGTCTTGTGGCAACCTGAAGAATTCGAGGATGGGGATGCTAATATGGTGCAGATAGTAGTGGACCCTCTGCTTGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCGGGCTTAAATAGTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGTTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACCCTTCTTTACCAAGGGTTCGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAGGCTGAGATAAAGAAGTGGGTTGGAGACAGAGTTTGCCTCATTGCTCTCTGTGAAAGTACCAGAGATGATGTTGTTTCCGGAATTGATCAGTTCACAAGTGCTCGCAGCCGTTTGCAGGTTCTAATTGTTTCTTACGAGACATTCCGAATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTCATATGTGATGAGGCTCACAGGCTAAAGAATGACCAAACGATGACGAATAGGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCCATGGTCAACTTCACTAATCCAGGAATCTTAGGTGATGCTGCACATTTTCGTCGATACTATGAGGCACCTATTATTTGTGGAAGAGAACCTAATGCCTGTGAAGAAGAGAGGAAACTAGGTCTTGAGCGCTCTTCAGAACTCAGTGCAAAAGTTAATCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACCAAAGATAATTGAAGTTGTCTGTTGCAAGTTGACTCCTCTCCAATTAGACCTTTATAACCATTTTATACATTCCAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTTTAAAGAAGCTATGCAATCATCCAAAGCTCATCTATGATACTATAAAAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGACTGGCGGAGATGGGGCTTGGGTTGAACTGTCAGGAAAGATGCATGTTTTAGCTAGGTTACTTGCCCAATTACGAAAGAAGACTGATGACCGTATTGTCCTTGTCTCAAACTATACACAGACACTGGACCTTTTTGCACAATTGTGTCGAGAAAGAAGATACCCATATTTGAGGCTTGACGGAACAACTTCTATCAGTAAAAGACAGAAATTAGTAAACCAATTCAATGACCCCTCAAAGGATGAATTTGCATTTCTCTTAAGCAGTAAGGCTGGTGGCTGTGGTCTCAATTTGATAGGCGGAAATCGACTGGTGTTGTTTGATCCTGATTGGAATCCAGCCAATGATAAACAAGCTGCTGCTAGAGTTTGGAGGGATGGGCAAAAGAAGAGAGTATACATTTATAGATTTTTGAGTACTGGAACAATTGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTTCAAAAAGTTATTCAGAAGGAACAAGCCGATAGCCCGATGGCACAGGGGAATCTTTCAATTGAGGACCTACGCGATTTGTTCACATTTCATGAGAATGTGAGGTCTGATGTGCATGAGAAGATGAACTGCAACCGTTGTCAAACTTATCATGATACACCTCAGAGTACAGCAGAGGGAGATATAAACCAATCAACTTATAAAAGCAGCGAGTCTGCACCAGAAATCTCTGATATAGGTGGATTTGCAGAAATTACTGGATGCTTACAGAAGTTAAAGAGCTCAGAAAAGCAGATCGGGACACCTCTAGAGGAAGATTTAAGTAACTGGGGGCATCATTTCTTCTCTACTTCAGTACCCGATGCTATTCTCCAAGCTTCAGCTGGTGATGAGGTCACTTTTGTTTTTACAAACCAAGTGGACGGGAAGCTTGTGCCTATAGAATCAAAAGCAAGTCCAAAGATGCAGGGAGAAGAAGGAAAAGAGAATATTTTCAAATCAAAGCAAAACCTGAATCAGAAATCCATGCTAATGTCTTGGCAAAGAAAACCACTTGAATCTCTTTCTTCGAGTGTAAATACTGCCAGAAGCACATTATCAGCCCCTTTCAGGCCCTTGCAAAACACCACTGTGCAATCAGGGATAACCTCTTTAAAGGGTTCAGTAGCATTGAAGCCTAAACTCTCTCTTGGAAATCGGTTGCCCCAGAAAAGATCTTCTCCTGATACTGTTGAACATGATGATGATTTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

958

Amino Acids

107.41

Weight (kDa)

5.98

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	209 - 382	5.9e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	212 - 517	6e-71	SNF2-related domain
DEAD	PF00270	235 - 389	2.1e-08	DEAD/DEAH box helicase
Helicase_C	PF00271	564 - 678	1.5e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1437, 2322
AarI	CACCTGC	1 cut(s)	1383
AasI	GACNNNNNNGTC	2 cut(s)	745, 1748
Acc36I	ACCTGC	2 cut(s)	958, 1383
AccB1I	GGYRCC	1 cut(s)	1240
AccI	GTMKAC	2 cut(s)	2049, 2094
AccII	CGCG	2 cut(s)	165, 2196
AccIII	TCCGGA	2 cut(s)	212, 929
AclWI	GGATC	4 cut(s)	99, 530, 1654, 1970
AcsI	RAATTY	2 cut(s)	563, 1898
AcuI	CTGAAG	5 cut(s)	579, 1293, 1572, 2457, 2484
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	6 cut(s)	162, 910, 1009, 2071, 2290, 2478
AfeI	AGCGCT	1 cut(s)	1304
AfiI	CCNNNNNNNGG	5 cut(s)	212, 425, 967, 1891, 2730
AflII	CTTAAG	1 cut(s)	1912
AjnI	CCWGG	4 cut(s)	419, 526, 1195, 1579
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AleI	CACNNNNGTG	2 cut(s)	1795, 2750
Alw21I	GWGCWC	4 cut(s)	129, 442, 955, 2405
Alw26I	GTCTC	6 cut(s)	172, 398, 870, 983, 1762, 1943
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	4 cut(s)	99, 530, 1654, 1970
AlwNI	CAGNNNCTG	1 cut(s)	1777
Aor13HI	TCCGGA	2 cut(s)	212, 929
Aor51HI	AGCGCT	1 cut(s)	1304
AoxI	GGCC	3 cut(s)	186, 810, 2732
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	7 cut(s)	689, 957, 1103, 1214, 2009, 2012, 2328
ApoI	RAATTY	2 cut(s)	563, 1898
ArsI	GACNNNNNNTTYG	1 cut(s)	35
Asp700I	GAANNNNTTC	4 cut(s)	648, 1840, 2121, 2612
AspLEI	GCGC	1 cut(s)	1305
AspS9I	GGNCC	5 cut(s)	187, 604, 1780, 2188, 2733
AsuHPI	GGTGA	5 cut(s)	280, 316, 1220, 1364, 2519
AvaII	GGWCC	3 cut(s)	604, 1780, 2188
BaeGI	GKGCMC	1 cut(s)	442
BaeI	ACNNNNGTAYC	2 cut(s)	2460, 2493
BanI	GGYRCC	1 cut(s)	1240
BanII	GRGCYC	2 cut(s)	129, 2405
BarI	GAAGNNNNNNTAC	2 cut(s)	2033, 2065
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	4 cut(s)	12, 123, 1488, 1739
Bbv12I	GWGCWC	4 cut(s)	129, 442, 955, 2405
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	7 cut(s)	676, 969, 1090, 1201, 1996, 1999, 2340
BccI	CCATC	7 cut(s)	217, 362, 566, 782, 1658, 2024, 2155
BceAI	ACGGC	1 cut(s)	945
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	4 cut(s)	421, 528, 1197, 1581
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	6 cut(s)	172, 398, 870, 983, 1762, 1943
BfaI	CTAG	6 cut(s)	471, 1160, 1292, 1707, 2016, 2429
BfmI	CTRYAG	1 cut(s)	2559
BfoI	RGCGCY	1 cut(s)	1306
BfrI	CTTAAG	1 cut(s)	1912
BfuAI	ACCTGC	2 cut(s)	958, 1383
BglII	AGATCT	2 cut(s)	1640, 2834
BisI	GCNGC	9 cut(s)	206, 256, 690, 958, 1104, 1215, 2010, 2013, 2329
BlsI	GCNGC	9 cut(s)	207, 257, 691, 959, 1105, 1216, 2011, 2014, 2330
BmcAI	AGTACT	1 cut(s)	2071
Bme1390I	CCNGG	4 cut(s)	421, 528, 1197, 1581
Bme18I	GGWCC	3 cut(s)	604, 1780, 2188
BmgT120I	GGNCC	5 cut(s)	187, 604, 1780, 2188, 2733
BmiI	GGNNCC	2 cut(s)	606, 1242
BmrFI	CCNGG	4 cut(s)	421, 528, 1197, 1581
BmrI	ACTGGG	1 cut(s)	2458
BmsI	GCATC	9 cut(s)	232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
BmuI	ACTGGG	1 cut(s)	2458
BpiI	GAAGAC	4 cut(s)	12, 123, 1488, 1739
BplI	GAGNNNNNCTC	2 cut(s)	873, 905
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	1319
BsaBI	GATNNNNATC	2 cut(s)	1645, 1986
BsaHI	GRCGYC	1 cut(s)	391
BsaI	GGTCTC	2 cut(s)	172, 1943
BsaJI	CCNNGG	6 cut(s)	183, 419, 420, 540, 778, 1176
BsaWI	WCCGGW	3 cut(s)	212, 451, 929
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 867, 897
Bsc4I	CCNNNNNNNGG	5 cut(s)	212, 425, 967, 1891, 2730
Bse1I	ACTGG	8 cut(s)	51, 831, 1660, 1782, 1968, 2077, 2383, 2453
Bse3DI	GCAATG	2 cut(s)	740, 891
Bse8I	GATNNNNATC	2 cut(s)	1645, 1986
BseAI	TCCGGA	2 cut(s)	212, 929
BseBI	CCWGG	4 cut(s)	421, 528, 1197, 1581
BseDI	CCNNGG	6 cut(s)	183, 419, 420, 540, 778, 1176
BseGI	GGATG	8 cut(s)	209, 577, 583, 710, 1540, 1900, 2035, 2387
BseJI	GATNNNNATC	2 cut(s)	1645, 1986
BseLI	CCNNNNNNNGG	5 cut(s)	212, 425, 967, 1891, 2730
BseMI	GCAATG	2 cut(s)	740, 891
BseMII	CTCAG	8 cut(s)	265, 411, 480, 846, 1330, 1491, 2297, 2418
BseNI	ACTGG	8 cut(s)	51, 831, 1660, 1782, 1968, 2077, 2383, 2453
BseRI	GAGGAG	3 cut(s)	31, 239, 1407
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	7 cut(s)	676, 969, 1090, 1201, 1996, 1999, 2340
BsgI	GTGCAG	3 cut(s)	611, 1200, 2322
Bsh1236I	CGCG	2 cut(s)	165, 2196
BshFI	GGCC	3 cut(s)	188, 812, 2734
BshNI	GGYRCC	1 cut(s)	1240
BsiHKAI	GWGCWC	4 cut(s)	129, 442, 955, 2405
BsiSI	CCGG	3 cut(s)	213, 452, 930
BsiWI	CGTACG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	2434
BslI	CCNNNNNNNGG	5 cut(s)	212, 425, 967, 1891, 2730
BsmAI	GTCTC	6 cut(s)	172, 398, 870, 983, 1762, 1943
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	2434
BsmI	GAATGC	2 cut(s)	1005, 1605
BsnI	GGCC	3 cut(s)	188, 812, 2734
Bso31I	GGTCTC	2 cut(s)	172, 1943
Bsp1286I	GDGCHC	4 cut(s)	129, 442, 955, 2405
Bsp13I	TCCGGA	2 cut(s)	212, 929
Bsp1407I	TGTACA	1 cut(s)	1007
Bsp143I	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
Bsp19I	CCATGG	1 cut(s)	1176
BspANI	GGCC	3 cut(s)	188, 812, 2734
BspCNI	CTCAG	8 cut(s)	264, 410, 481, 847, 1329, 1490, 2296, 2417
BspEI	TCCGGA	2 cut(s)	212, 929
BspFNI	CGCG	2 cut(s)	165, 2196
BspHI	TCATGA	2 cut(s)	2212, 2272
BspLI	GGNNCC	2 cut(s)	606, 1242
BspMI	ACCTGC	2 cut(s)	958, 1383
BspPI	GGATC	4 cut(s)	99, 530, 1654, 1970
BspQI	GCTCTTC	1 cut(s)	1312
BspT107I	GGYRCC	1 cut(s)	1240
BspTI	CTTAAG	1 cut(s)	1912
BspTNI	GGTCTC	2 cut(s)	172, 1943
BsrDI	GCAATG	2 cut(s)	740, 891
BsrGI	TGTACA	1 cut(s)	1007
BsrI	ACTGG	8 cut(s)	51, 831, 1660, 1782, 1968, 2077, 2383, 2453
BssECI	CCNNGG	6 cut(s)	183, 419, 420, 540, 778, 1176
BssMI	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
BssNAI	GTATAC	1 cut(s)	2050
BssNI	GRCGYC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	4 cut(s)	183, 540, 778, 1176
Bst1107I	GTATAC	1 cut(s)	2050
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	4 cut(s)	421, 528, 1197, 1581
Bst4CI	ACNGT	9 cut(s)	322, 411, 444, 1025, 1683, 1745, 2258, 2752, 2851
Bst6I	CTCTTC	7 cut(s)	288, 501, 1158, 1252, 1275, 1312, 2036
BstACI	GRCGYC	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	1912
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstAUI	TGTACA	1 cut(s)	1007
BstC8I	GCNNGC	6 cut(s)	190, 384, 403, 676, 955, 1118
BstDEI	CTNAG	9 cut(s)	251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
BstDSI	CCRYGG	1 cut(s)	1176
BstF5I	GGATG	8 cut(s)	209, 577, 583, 710, 1540, 1900, 2035, 2387
BstFNI	CGCG	2 cut(s)	165, 2196
BstH2I	RGCGCY	1 cut(s)	1306
BstHHI	GCGC	1 cut(s)	1305
BstKTI	GATC	9 cut(s)	94, 223, 538, 940, 1643, 1649, 1978, 2418, 2837
BstMAI	GTCTC	6 cut(s)	172, 398, 870, 983, 1762, 1943
BstMBI	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 388, 1103
BstNI	CCWGG	4 cut(s)	421, 528, 1197, 1581
BstNSI	RCATGY	1 cut(s)	1700
BstSCI	CCNGG	4 cut(s)	419, 526, 1195, 1579
BstSFI	CTRYAG	1 cut(s)	2559
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	2 cut(s)	165, 2196
BstV1I	GCAGC	7 cut(s)	676, 969, 1090, 1201, 1996, 1999, 2340
BstV2I	GAAGAC	4 cut(s)	12, 123, 1488, 1739
BstX2I	RGATCY	3 cut(s)	91, 1640, 2834
BstYI	RGATCY	3 cut(s)	91, 1640, 2834
BstZ17I	GTATAC	1 cut(s)	2050
BsuRI	GGCC	3 cut(s)	188, 812, 2734
BtgI	CCRYGG	1 cut(s)	1176
BtsCI	GGATG	8 cut(s)	209, 577, 583, 710, 1540, 1900, 2035, 2387
BtsI	GCAGTG	2 cut(s)	69, 518
BtsIMutI	CAGTG	6 cut(s)	69, 518, 1030, 1324, 1775, 2748
BveI	ACCTGC	2 cut(s)	958, 1383
Cac8I	GCNNGC	6 cut(s)	190, 384, 403, 676, 955, 1118
CaiI	CAGNNNCTG	1 cut(s)	1777
CciI	TCATGA	2 cut(s)	2212, 2272
CfoI	GCGC	1 cut(s)	1305
Cfr13I	GGNCC	5 cut(s)	187, 604, 1780, 2188, 2733
CseI	GACGC	2 cut(s)	380, 2090
Csp6I	GTAC	6 cut(s)	161, 909, 1008, 2070, 2289, 2477
CspCI	CAANNNNNGTGG	6 cut(s)	69, 104, 817, 852, 2520, 2555
CviQI	GTAC	6 cut(s)	161, 909, 1008, 2070, 2289, 2477
DdeI	CTNAG	9 cut(s)	251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
DpnI	GATC	9 cut(s)	93, 222, 537, 939, 1642, 1648, 1977, 2417, 2836
DpnII	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
DraI	TTTAAA	3 cut(s)	340, 1524, 2775
DrdI	GACNNNNNNGTC	2 cut(s)	745, 1748
DseDI	GACNNNNNNGTC	2 cut(s)	745, 1748
Eam1104I	CTCTTC	7 cut(s)	288, 501, 1158, 1252, 1275, 1312, 2036
EarI	CTCTTC	7 cut(s)	288, 501, 1158, 1252, 1275, 1312, 2036
EciI	GGCGGA	3 cut(s)	192, 1674, 1968
Ecl136II	GAGCTC	2 cut(s)	127, 2403
Eco130I	CCWWGG	4 cut(s)	183, 540, 778, 1176
Eco24I	GRGCYC	2 cut(s)	129, 2405
Eco31I	GGTCTC	2 cut(s)	172, 1943
Eco47I	GGWCC	3 cut(s)	604, 1780, 2188
Eco47III	AGCGCT	1 cut(s)	1304
Eco53kI	GAGCTC	2 cut(s)	127, 2403
Eco57I	CTGAAG	5 cut(s)	579, 1293, 1572, 2457, 2484
EcoICRI	GAGCTC	2 cut(s)	127, 2403
EcoO109I	RGGNCCY	2 cut(s)	2188, 2733
EcoRI	GAATTC	1 cut(s)	563
EcoRII	CCWGG	4 cut(s)	419, 526, 1195, 1579
EcoT14I	CCWWGG	4 cut(s)	183, 540, 778, 1176
EcoT22I	ATGCAT	2 cut(s)	1005, 1698
EcoT38I	GRGCYC	2 cut(s)	129, 2405
ErhI	CCWWGG	4 cut(s)	183, 540, 778, 1176
Esp3I	CGTCTC	1 cut(s)	398
FalI	AAGNNNNNCTT	2 cut(s)	2106, 2138
FaqI	GGGAC	1 cut(s)	2434
FauI	CCCGC	2 cut(s)	197, 667
FauNDI	CATATG	1 cut(s)	1046
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	2 cut(s)	2049, 2094
Fnu4HI	GCNGC	9 cut(s)	206, 256, 690, 958, 1104, 1215, 2010, 2013, 2329
FokI	GGATG	8 cut(s)	196, 584, 590, 717, 1527, 1907, 2042, 2394
FriOI	GRGCYC	2 cut(s)	129, 2405
Fsp4HI	GCNGC	9 cut(s)	206, 256, 690, 958, 1104, 1215, 2010, 2013, 2329
FspBI	CTAG	6 cut(s)	471, 1160, 1292, 1707, 2016, 2429
GlaI	GCGC	1 cut(s)	1304
GluI	GCNGC	9 cut(s)	206, 256, 690, 958, 1104, 1215, 2010, 2013, 2329
HaeII	RGCGCY	1 cut(s)	1306
HaeIII	GGCC	3 cut(s)	188, 812, 2734
HapII	CCGG	3 cut(s)	213, 452, 930
HgaI	GACGC	2 cut(s)	380, 2090
HhaI	GCGC	1 cut(s)	1305
Hin1I	GRCGYC	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	1303
HinP1I	GCGC	1 cut(s)	1303
HincII	GTYRAC	2 cut(s)	1183, 1413
HindII	GTYRAC	2 cut(s)	1183, 1413
HindIII	AAGCTT	2 cut(s)	2496, 2549
HpaII	CCGG	3 cut(s)	213, 452, 930
HphI	GGTGA	5 cut(s)	280, 316, 1220, 1364, 2519
Hpy99I	CGWCG	5 cut(s)	65, 158, 161, 177, 1230
HpyAV	CCTTC	9 cut(s)	209, 305, 635, 638, 779, 1049, 2111, 2134, 2591
HpyCH4III	ACNGT	9 cut(s)	322, 411, 444, 1025, 1683, 1745, 2258, 2752, 2851
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 388, 1103
HpyF3I	CTNAG	9 cut(s)	251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	391
HspAI	GCGC	1 cut(s)	1303
Kpn2I	TCCGGA	2 cut(s)	212, 929
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
LguI	GCTCTTC	1 cut(s)	1312
LmnI	GCTCC	2 cut(s)	314, 356
Lsp1109I	GCAGC	7 cut(s)	676, 969, 1090, 1201, 1996, 1999, 2340
LweI	GCATC	9 cut(s)	232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
MaeI	CTAG	6 cut(s)	471, 1160, 1292, 1707, 2016, 2429
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	7 cut(s)	304, 514, 820, 1034, 1710, 2444, 2515
MalI	GATC	9 cut(s)	93, 222, 537, 939, 1642, 1648, 1977, 2417, 2836
MboI	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
MfeI	CAATTG	4 cut(s)	844, 1793, 2079, 2181
MflI	RGATCY	3 cut(s)	91, 1640, 2834
MhlI	GDGCHC	4 cut(s)	129, 442, 955, 2405
MlyI	GAGTC	2 cut(s)	1408, 2342
MmeI	TCCRAC	2 cut(s)	155, 853
Mph1103I	ATGCAT	2 cut(s)	1005, 1698
MroI	TCCGGA	2 cut(s)	212, 929
MroXI	GAANNNNTTC	4 cut(s)	648, 1840, 2121, 2612
MslI	CAYNNNNRTG	5 cut(s)	1795, 2217, 2651, 2750, 2862
MspA1I	CMGCKG	2 cut(s)	255, 2504
MspCI	CTTAAG	1 cut(s)	1912
MspI	CCGG	3 cut(s)	213, 452, 930
MspR9I	CCNGG	4 cut(s)	421, 528, 1197, 1581
MunI	CAATTG	4 cut(s)	844, 1793, 2079, 2181
Mva1269I	GAATGC	2 cut(s)	1005, 1605
MvaI	CCWGG	4 cut(s)	421, 528, 1197, 1581
MvnI	CGCG	2 cut(s)	165, 2196
MwoI	GCNNNNNNNGC	3 cut(s)	357, 388, 1103
NcoI	CCATGG	1 cut(s)	1176
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
NlaIV	GGNNCC	2 cut(s)	606, 1242
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	5 cut(s)	304, 514, 820, 1034, 2515
NsiI	ATGCAT	2 cut(s)	1005, 1698
NspI	RCATGY	1 cut(s)	1700
OliI	CACNNNNGTG	2 cut(s)	1795, 2750
PagI	TCATGA	2 cut(s)	2212, 2272
PaqCI	CACCTGC	1 cut(s)	1383
PasI	CCCWGGG	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	1312
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 169, 625
PctI	GAATGC	2 cut(s)	1005, 1605
PdmI	GAANNNNTTC	4 cut(s)	648, 1840, 2121, 2612
Pfl23II	CGTACG	1 cut(s)	160
PfoI	TCCNGGA	2 cut(s)	1195, 1579
PkrI	GCNGC	9 cut(s)	207, 257, 691, 959, 1105, 1216, 2011, 2014, 2330
PleI	GAGTC	2 cut(s)	1408, 2341
PpsI	GAGTC	2 cut(s)	1408, 2341
PpuMI	RGGWCCY	1 cut(s)	2188
PsiI	TTATAA	2 cut(s)	1437, 2322
Psp124BI	GAGCTC	2 cut(s)	129, 2405
Psp5II	RGGWCCY	1 cut(s)	2188
Psp6I	CCWGG	4 cut(s)	419, 526, 1195, 1579
PspGI	CCWGG	4 cut(s)	419, 526, 1195, 1579
PspLI	CGTACG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	606, 1242
PspPI	GGNCC	5 cut(s)	187, 604, 1780, 2188, 2733
PspPPI	RGGWCCY	1 cut(s)	2188
PstNI	CAGNNNCTG	1 cut(s)	1777
PsuI	RGATCY	3 cut(s)	91, 1640, 2834
PvuII	CAGCTG	1 cut(s)	2504
RsaI	GTAC	6 cut(s)	162, 910, 1009, 2071, 2290, 2478
RsaNI	GTAC	6 cut(s)	161, 909, 1008, 2070, 2289, 2477
RseI	CAYNNNNRTG	5 cut(s)	1795, 2217, 2651, 2750, 2862
SacI	GAGCTC	2 cut(s)	129, 2405
SapI	GCTCTTC	1 cut(s)	1312
SatI	GCNGC	9 cut(s)	206, 256, 690, 958, 1104, 1215, 2010, 2013, 2329
Sau3AI	GATC	9 cut(s)	91, 220, 535, 937, 1640, 1646, 1975, 2415, 2834
Sau96I	GGNCC	5 cut(s)	187, 604, 1780, 2188, 2733
ScaI	AGTACT	1 cut(s)	2071
SchI	GAGTC	2 cut(s)	1408, 2342
ScrFI	CCNGG	4 cut(s)	421, 528, 1197, 1581
SduI	GDGCHC	4 cut(s)	129, 442, 955, 2405
SfaNI	GCATC	9 cut(s)	232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
SfcI	CTRYAG	1 cut(s)	2559
SinI	GGWCC	3 cut(s)	604, 1780, 2188
SmiMI	CAYNNNNRTG	5 cut(s)	1795, 2217, 2651, 2750, 2862
SmlI	CTYRAG	2 cut(s)	1298, 1912
SmoI	CTYRAG	2 cut(s)	1298, 1912
SspI	AATATT	2 cut(s)	1503, 2611
SspMI	CTAG	6 cut(s)	471, 1160, 1292, 1707, 2016, 2429
SstI	GAGCTC	2 cut(s)	129, 2405
StyD4I	CCNGG	4 cut(s)	419, 526, 1195, 1579
StyI	CCWWGG	4 cut(s)	183, 540, 778, 1176
TaaI	ACNGT	9 cut(s)	322, 411, 444, 1025, 1683, 1745, 2258, 2752, 2851
TaiI	ACGT	1 cut(s)	162
TatI	WGTACW	3 cut(s)	1007, 2069, 2288
TauI	GCSGC	2 cut(s)	208, 258
TscAI	CASTG	6 cut(s)	76, 525, 1030, 1324, 1782, 2755
TseFI	GTSAC	5 cut(s)	304, 514, 820, 1034, 2515
TseI	GCWGC	7 cut(s)	689, 957, 1103, 1214, 2009, 2012, 2328
Tsp45I	GTSAC	5 cut(s)	304, 514, 820, 1034, 2515
TspDTI	ATGAA	6 cut(s)	420, 646, 1101, 1911, 2201, 2261
TspGWI	ACGGA	2 cut(s)	323, 1848
TspRI	CASTG	6 cut(s)	76, 525, 1030, 1324, 1782, 2755
Vha464I	CTTAAG	1 cut(s)	1912
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	3 cut(s)	604, 1780, 2188
XapI	RAATTY	2 cut(s)	563, 1898
XbaI	TCTAGA	1 cut(s)	2428
XceI	RCATGY	1 cut(s)	1700
XcmI	CCANNNNNNNNNTGG	2 cut(s)	785, 2501
XmiI	GTMKAC	2 cut(s)	2049, 2094
XmnI	GAANNNNTTC	4 cut(s)	648, 1840, 2121, 2612
XspI	CTAG	6 cut(s)	471, 1160, 1292, 1707, 2016, 2429
ZrmI	AGTACT	1 cut(s)	2071
Zsp2I	ATGCAT	2 cut(s)	1005, 1698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.