Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

17200191 .. 17202562

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1193800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTCGTCGCAAATGAGGAATTCCAGCATATTCTGCGTGTGCTGAATACCAACGTGGATGGAAAGCAGAAGATCATGTTCGCCCTTACCTCCATCAAGGGTATCGGCAGACGTTTCGCCAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGCTATCTGCTGCCGAGCTCGACAATCTGATGACTATTGTGGCAAACCCCCGCCAGTTCAAGATCCCTGACTGGTTCTTGAACAGAAAGAAGGACTACAAGGATGGTAAATACTCCCAGGTGGTCTCCAATGCTTTGGACATGAAGCTCAGGGATGACCTTGAGCGCTTGAAGAAGATCAGGAATCACCGTGGTCTTCGACACTACTGGGGCCTTCGTGTGCGTGGACAGCACACCAAGACCACTGGCCGCAGGGGAAAGACTGTTGGTGTATCCAAGAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

17.58

Weight (kDa)

10.56

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	6.6e-57	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	223, 421
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	23
AfeI	AGCGCT	2 cut(s)	338, 455
AgsI	TTSAA	3 cut(s)	232, 253, 343
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	175, 190, 319
AluI	AGCT	3 cut(s)	175, 190, 319
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	9, 301
AlwI	GGATC	1 cut(s)	229
Aor51HI	AGCGCT	2 cut(s)	338, 455
AoxI	GGCC	2 cut(s)	382, 418
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	339, 456
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	182, 350
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	56, 104, 269
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	9, 301
BfoI	RGCGCY	2 cut(s)	340, 457
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	183, 421
BlsI	GCNGC	2 cut(s)	184, 422
Bme1390I	CCNGG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	288, 361
Bse1I	ACTGG	4 cut(s)	226, 248, 383, 421
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	288, 361
BseGI	GGATG	3 cut(s)	67, 280, 331
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	4 cut(s)	226, 248, 383, 421
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	384, 420
BsiHKAI	GWGCWC	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	9, 301
BsnI	GGCC	2 cut(s)	384, 420
Bso31I	GGTCTC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	75, 234, 348
BspACI	CCGC	2 cut(s)	223, 421
BspANI	GGCC	2 cut(s)	384, 420
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	301
BsrI	ACTGG	4 cut(s)	226, 248, 383, 421
BssECI	CCNNGG	2 cut(s)	288, 361
BssMI	GATC	3 cut(s)	75, 234, 348
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	362, 436
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	67, 280, 331
BstH2I	RGCGCY	2 cut(s)	340, 457
BstHHI	GCGC	2 cut(s)	339, 456
BstKTI	GATC	3 cut(s)	78, 237, 351
BstMAI	GTCTC	2 cut(s)	9, 301
BstMBI	GATC	3 cut(s)	75, 234, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 400
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	384, 420
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	67, 280, 331
BtsIMutI	CAGTG	1 cut(s)	414
CfoI	GCGC	2 cut(s)	339, 456
Cfr13I	GGNCC	1 cut(s)	382
CviAII	CATG	3 cut(s)	79, 154, 313
CviJI	RGCY	7 cut(s)	143, 167, 175, 190, 319, 384, 420
CviKI_1	RGCY	7 cut(s)	143, 167, 175, 190, 319, 384, 420
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	77, 236, 350
DpnII	GATC	3 cut(s)	75, 234, 348
EaeI	YGGCCR	1 cut(s)	418
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	301
Eco47III	AGCGCT	2 cut(s)	338, 455
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	3 cut(s)	82, 157, 316
FaiI	YATR	4 cut(s)	33, 80, 155, 314
FatI	CATG	3 cut(s)	78, 153, 312
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	183, 421
FokI	GGATG	3 cut(s)	74, 287, 338
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	183, 421
GlaI	GCGC	2 cut(s)	338, 455
GluI	GCNGC	2 cut(s)	183, 421
HaeII	RGCGCY	2 cut(s)	340, 457
HaeIII	GGCC	2 cut(s)	384, 420
HhaI	GCGC	2 cut(s)	339, 456
Hin1II	CATG	3 cut(s)	82, 157, 316
Hin6I	GCGC	2 cut(s)	337, 454
HinP1I	GCGC	2 cut(s)	337, 454
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	2 cut(s)	182, 350
Hpy166II	GTNNAC	2 cut(s)	151, 398
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	232, 250, 352
Hpy8I	GTNNAC	2 cut(s)	151, 398
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	133, 256, 395
HpyCH4III	ACNGT	2 cut(s)	362, 436
HpyCH4IV	ACGT	2 cut(s)	57, 115
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 400
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	57, 115
Hsp92II	CATG	3 cut(s)	82, 157, 316
HspAI	GCGC	2 cut(s)	337, 454
Kzo9I	GATC	3 cut(s)	75, 234, 348
Lsp1109I	GCAGC	1 cut(s)	169
MaeII	ACGT	2 cut(s)	57, 115
MalI	GATC	3 cut(s)	77, 236, 350
MboI	GATC	3 cut(s)	75, 234, 348
MboII	GAAGA	4 cut(s)	85, 355, 358, 359
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	13, 103
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	37, 400
NdeII	GATC	3 cut(s)	75, 234, 348
NlaIII	CATG	3 cut(s)	82, 157, 316
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	184, 422
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	2 cut(s)	183, 421
Sau3AI	GATC	3 cut(s)	75, 234, 348
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	60, 95, 118, 177, 192, 294, 321, 333
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	223, 421
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	362, 436
TaiI	ACGT	2 cut(s)	60, 118
TaqI	TCGA	3 cut(s)	150, 192, 370
TasI	AATT	1 cut(s)	23
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	170, 329
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.