Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

28039470 .. 28041447

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTTCGCTCTGACCTCCATCAAGGGTATCAGACGCAGTTTCGCCAACATCGTCTGCAAGAAGGCCGACGTCGACATGAACAGGAGGGACATGCTTGGATCAGTAGAGCTTCAAGAAGTTGAAGGAACTGAAAGAGAAGAAGACTACAAATTCAACTTCCATTCATTTACTTCACTGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

60

Amino Acids

6.96

Weight (kDa)

5.71

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	113, 122, 154
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	106
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
CseI	GACGC	1 cut(s)	42
CviAII	CATG	2 cut(s)	76, 91
CviJI	RGCY	2 cut(s)	65, 109
CviKI_1	RGCY	2 cut(s)	65, 109
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
FaeI	CATG	2 cut(s)	79, 94
FaiI	YATR	2 cut(s)	77, 92
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	75, 90
FblI	GTMKAC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	79, 94
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	12, 32
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	71, 74
HpyAV	CCTTC	2 cut(s)	55, 116
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	79, 94
Kzo9I	GATC	1 cut(s)	98
LpnPI	CCDG	1 cut(s)	67
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	149, 152
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	2 cut(s)	25, 78
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	79, 94
NspI	RCATGY	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	98
SetI	ASST	3 cut(s)	17, 72, 111
SgeI	CNNG	7 cut(s)	34, 70, 88, 94, 103, 107, 125
Sse9I	AATT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	149
TscAI	CASTG	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	92, 153
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.