Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

16418439 .. 16419742

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAGTCGCTCGTTGCCAACGAAGAATTCCAGCACATTCTGCGTGTGCTCAACACCAACGTCGATGGGAAGCAGAAGATCATGTTTGCCATGACCTCCATCAAAGGTATTGGCCGCCGTTTGGCCAATATCGTCTGCAAAAAGGCCGATGTCGACATGAACAAGAGAGCTGGTGAACTATCTGCTGCCGAGATTGATAACCTCATGACAATTGTTGGGAATCCTCGCCAGTTCAAAATTCCTGATTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGCAGGTATTCCCAAGTTGTTGCCAATGCTTTGGACATGAAGCTGAGAGATGATCTCGAGCGGTTGAAGAAGATCAGGAACCACCGTGGTCTTCGTCACTACTGGGGTCTTCGGGTACGTGGGCAGCACACCAAGACTACTGGTCGCAGGGGAAAGACCGTTGGTGTCTCCAAGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

17.69

Weight (kDa)

10.64

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	15 - 143	5.8e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AccBSI	CCGCTC	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	2 cut(s)	115, 340
AcoI	YGGCCR	2 cut(s)	112, 123
AcsI	RAATTY	2 cut(s)	26, 237
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	235, 256, 346
AhdI	GACNNNNNGTC	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	170, 322
AluI	AGCT	2 cut(s)	170, 322
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	112, 123, 144
ApeKI	GCWGC	2 cut(s)	185, 403
ApoI	RAATTY	2 cut(s)	26, 237
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	2 cut(s)	362, 380
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	172, 415
BccI	CCATC	3 cut(s)	59, 107, 272
BceAI	ACGGC	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	273
BisI	GCNGC	3 cut(s)	115, 186, 404
BlsI	GCNGC	3 cut(s)	116, 187, 405
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	362, 380
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	229, 386, 424
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	229, 386, 424
BseXI	GCAGC	2 cut(s)	172, 415
BshFI	GGCC	3 cut(s)	114, 125, 146
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	114, 125, 146
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	78, 331, 351
BspACI	CCGC	2 cut(s)	115, 340
BspANI	GGCC	3 cut(s)	114, 125, 146
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	229, 386, 424
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	78, 331, 351
Bst4CI	ACNGT	2 cut(s)	365, 439
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	3 cut(s)	81, 334, 354
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	3 cut(s)	78, 331, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	172, 415
BstV2I	GAAGAC	2 cut(s)	362, 380
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	114, 125, 146
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	5 cut(s)	82, 91, 157, 205, 316
CviJI	RGCY	5 cut(s)	114, 125, 146, 170, 322
CviKI_1	RGCY	5 cut(s)	114, 125, 146, 170, 322
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	80, 333, 353
DpnII	GATC	3 cut(s)	78, 331, 351
DriI	GACNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	112, 123
Eam1105I	GACNNNNNGTC	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	26
FaeI	CATG	5 cut(s)	85, 94, 160, 208, 319
FaiI	YATR	5 cut(s)	83, 92, 158, 206, 317
FatI	CATG	5 cut(s)	81, 90, 156, 204, 315
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	115, 186, 404
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	115, 186, 404
GluI	GCNGC	3 cut(s)	115, 186, 404
HaeIII	GGCC	3 cut(s)	114, 125, 146
Hin1II	CATG	5 cut(s)	85, 94, 160, 208, 319
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	154, 176
Hpy188III	TCNNGA	4 cut(s)	205, 242, 335, 355
Hpy8I	GTNNAC	2 cut(s)	154, 176
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	365, 439
HpyCH4IV	ACGT	2 cut(s)	60, 397
HpyCH4V	TGCA	2 cut(s)	4, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	60, 397
Hsp92II	CATG	5 cut(s)	85, 94, 160, 208, 319
Kzo9I	GATC	3 cut(s)	78, 331, 351
Lsp1109I	GCAGC	2 cut(s)	172, 415
MaeII	ACGT	2 cut(s)	60, 397
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	80, 333, 353
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	3 cut(s)	78, 331, 351
MboII	GAAGA	7 cut(s)	35, 88, 274, 358, 361, 362, 380
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	3 cut(s)	26, 210, 237
MluNI	TGGCCA	1 cut(s)	125
MnlI	CCTC	3 cut(s)	106, 212, 234
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	3 cut(s)	78, 331, 351
NlaIII	CATG	5 cut(s)	85, 94, 160, 208, 319
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	116, 187, 405
Ppu21I	YACGTR	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	3 cut(s)	115, 186, 404
Sau3AI	GATC	3 cut(s)	78, 331, 351
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	63, 98, 109, 172, 204, 287, 324, 400
Sfr274I	CTCGAG	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	3 cut(s)	26, 210, 237
SsiI	CCGC	2 cut(s)	115, 340
TaaI	ACNGT	2 cut(s)	365, 439
TaiI	ACGT	2 cut(s)	63, 400
TaqI	TCGA	3 cut(s)	63, 153, 336
TasI	AATT	3 cut(s)	26, 210, 237
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	185, 403
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	173, 332
XapI	RAATTY	2 cut(s)	26, 237
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.