Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Reverse (-)

40154635 .. 40156509

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1283300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTGGTAGCGAACGAAGAGTTTCAGCACATTCTGCGTGTGCTGAACACCAATGTGGACGGGAAGCAGAAGATTATGTTTGCCCTAACCTCCATCAAAGGTATCGGACGTCGTTTCGCCAACATTGTCTGCAAGAAGGCTGACGTCGACATGAACAAGAGGGCTGGTGAACTGTCTGCCGCGGAGCTTGATACCCTCATGACAATTGTTGCGAATCCTCGCCAGTTCAAAATTCCAGACTGGTTTTTAAACAGGAAGAAAGATTACAAGGACGGGAGGTACTCTCAAGTTGTTTCCAATGCATTGGACATGAAGCTGAGGGACGACCTCGAACGCTTGAAGAAGATCAGGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGGGTGCGTGGGCAGCACACCAAGACCACCGGTCGCAGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

17.59

Weight (kDa)

10.64

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	2.1e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	115, 150
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	183, 185
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	2 cut(s)	112, 147
AfaI	GTAC	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	232, 343
AhdI	GACNNNNNGTC	1 cut(s)	417
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	190, 319
AluI	AGCT	2 cut(s)	190, 319
Alw26I	GTCTC	4 cut(s)	9, 371, 389, 448
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	4 cut(s)	9, 371, 389, 448
BisI	GCNGC	2 cut(s)	183, 401
BlsI	GCNGC	2 cut(s)	184, 402
Bme1390I	CCNGG	1 cut(s)	389
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	2 cut(s)	112, 147
BsaI	GGTCTC	2 cut(s)	371, 389
BsaJI	CCNNGG	2 cut(s)	183, 361
BsaWI	WCCGGW	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	226, 248, 383
BseDI	CCNNGG	2 cut(s)	183, 361
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	226, 248, 383
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	421
BshTI	ACCGGT	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	388, 417
BslFI	GGGAC	1 cut(s)	338
BsmAI	GTCTC	4 cut(s)	9, 371, 389, 448
BsmFI	GGGAC	1 cut(s)	338
Bso31I	GGTCTC	2 cut(s)	371, 389
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	183, 185
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	356
BspTNI	GGTCTC	2 cut(s)	371, 389
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	226, 248, 383
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	183, 361
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	2 cut(s)	112, 147
Bst4CI	ACNGT	3 cut(s)	177, 362, 436
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	2 cut(s)	112, 147
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	2 cut(s)	183, 361
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	4 cut(s)	9, 371, 389, 448
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 400
BstSCI	CCNGG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	307
BtgI	CCRYGG	2 cut(s)	183, 361
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	416
Cfr42I	CCGCGG	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	283
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	3 cut(s)	154, 202, 313
CviJI	RGCY	4 cut(s)	143, 167, 190, 319
CviKI_1	RGCY	4 cut(s)	143, 167, 190, 319
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraI	TTTAAA	1 cut(s)	252
DriI	GACNNNNNGTC	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	15
Eco31I	GGTCTC	2 cut(s)	371, 389
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	3 cut(s)	157, 205, 316
FaiI	YATR	4 cut(s)	80, 155, 203, 314
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	153, 201, 312
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	183, 401
Fsp4HI	GCNGC	2 cut(s)	183, 401
GluI	GCNGC	2 cut(s)	183, 401
HapII	CCGG	2 cut(s)	388, 417
Hin1I	GRCGYC	2 cut(s)	112, 147
Hin1II	CATG	3 cut(s)	157, 205, 316
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	388, 417
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	61, 151, 173
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	202, 239, 352
Hpy8I	GTNNAC	3 cut(s)	61, 151, 173
Hpy99I	CGWCG	2 cut(s)	117, 152
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	177, 362, 436
HpyCH4IV	ACGT	2 cut(s)	112, 147
HpyCH4V	TGCA	2 cut(s)	135, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 400
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	112, 147
Hsp92I	GRCGYC	2 cut(s)	112, 147
Hsp92II	CATG	3 cut(s)	157, 205, 316
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	153, 229, 239, 241, 252, 337, 364, 401, 430
Lsp1109I	GCAGC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	112, 147
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	5 cut(s)	32, 85, 271, 355, 358
MfeI	CAATTG	1 cut(s)	207
MluCI	AATT	2 cut(s)	207, 234
MnlI	CCTC	8 cut(s)	103, 156, 209, 231, 273, 315, 341, 419
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	388, 417
MspR9I	CCNGG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	37, 400
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	157, 205, 316
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	56
PagI	TCATGA	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	184, 402
PspN4I	GGNNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	56
SacII	CCGCGG	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	183, 401
Sau3AI	GATC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	8 cut(s)	95, 106, 115, 150, 192, 284, 321, 333
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	207, 234
SsiI	CCGC	2 cut(s)	183, 185
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	177, 362, 436
TaiI	ACGT	2 cut(s)	115, 150
TaqI	TCGA	2 cut(s)	150, 333
TasI	AATT	2 cut(s)	207, 234
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	170, 329
TspGWI	ACGGA	1 cut(s)	359
XapI	RAATTY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	24
ZraI	GACGTC	2 cut(s)	113, 148
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.