Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

8067864 .. 8069356

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGCTCAATACTAATGTCGATGGGAAGCAAAAAATTATGTTTGCTTTGACCTCAATCAAGGGTATTGGAAGGCGATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGATCCCAGACTGGTTTCTTAACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCACACCAAAACCACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

152

Amino Acids

17.55

Weight (kDa)

10.54

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	6.2e-58	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	9, 344, 389
AlwI	GGATC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	56, 269, 366
BceAI	ACGGC	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	9, 344, 389
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	326, 353
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	226, 248, 383
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	177, 359
BseNI	ACTGG	3 cut(s)	226, 248, 383
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	9, 344, 389
BsmBI	CGTCTC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	234, 328, 348
BspCNI	CTCAG	2 cut(s)	178, 360
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	226, 248, 383
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	234, 328, 348
BssNI	GRCGYC	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	176, 186, 368
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	237, 331, 351
BstMAI	GTCTC	3 cut(s)	9, 344, 389
BstMBI	GATC	3 cut(s)	234, 328, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	201
CseI	GACGC	2 cut(s)	326, 429
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	3 cut(s)	154, 202, 313
CviJI	RGCY	3 cut(s)	122, 143, 167
CviKI_1	RGCY	3 cut(s)	122, 143, 167
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	176, 186, 368
DpnI	GATC	3 cut(s)	236, 330, 350
DpnII	GATC	3 cut(s)	234, 328, 348
Eco31I	GGTCTC	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	3 cut(s)	157, 205, 316
FaiI	YATR	5 cut(s)	33, 80, 155, 203, 314
FatI	CATG	3 cut(s)	153, 201, 312
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	2 cut(s)	326, 429
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	157, 205, 316
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	3 cut(s)	151, 392, 398
Hpy188I	TCNGA	2 cut(s)	353, 369
Hpy188III	TCNNGA	5 cut(s)	202, 232, 308, 332, 343
Hpy8I	GTNNAC	3 cut(s)	151, 392, 398
HpyAV	CCTTC	2 cut(s)	105, 133
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	3 cut(s)	176, 186, 368
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	157, 205, 316
Kzo9I	GATC	3 cut(s)	234, 328, 348
LpnPI	CCDG	6 cut(s)	153, 229, 239, 252, 364, 430
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	394
MalI	GATC	3 cut(s)	236, 330, 350
MboI	GATC	3 cut(s)	234, 328, 348
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	6 cut(s)	13, 103, 156, 209, 231, 363
MseI	TTAA	2 cut(s)	252, 457
MspI	CCGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	234, 328, 348
NlaIII	CATG	3 cut(s)	157, 205, 316
PagI	TCATGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	252, 457
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	234, 328, 348
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	95, 201, 397
SmlI	CTYRAG	2 cut(s)	332, 341
SmoI	CTYRAG	2 cut(s)	332, 341
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	252, 457
Tru9I	TTAA	2 cut(s)	252, 457
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	170, 329
TspGWI	ACGGA	1 cut(s)	377
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.