Rorug05G0191200

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001431
Physical Location & Seq
Forward (+)
18603214 .. 18608871
5658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0191200.1

Sequence Viewer

Length: 1224 bp
ATGACTTGTTTATCCTTCATACTCGGTAGAAAGGACTCATCAAGAAAACTTGGGTTTGAAGTTGATGACGAACTTTCTGGCATTCATGATGTTAAACTATACACGTACAGAGAGTTGAAGTTGGCGACTGAAGATTTTGATATAGCCAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGACAACTTAAAGATGGAAATCTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAGTTTTTGACTGAGATAGATGTGATCTCAAAAATAGAGCATGAAAATCTAGTTAAGCTCTATGGCTGTTGTATAGAAGGGGACCAGAGAATTTTGGTCTACAACTACCTCGAGAATAATAGTCTTGCACAAACTCTTCTTGGTGGAGGTTTCAGTAATATCCAGTTTAATTGGCGAACACGGCGTGGAATATGTATCGGAATTGCATGTGGGCTTGCGTTCCTTCATGAGGATGTACGTCCACATATTATTCACAGGGATATCAAAGCCAGCAATATTCTCCTTGATAAAGACCTAATGCCTAAAATTTCAGATTTTGGCCTTGCAAAACTTATCCCGGCCAACGTGACTCATGTTAGCACACGAGTGGCAGGAACAATAGGTTATCTGGCACCAGAATACGCAATACGAGGGCAATTGACGAGGAGAGCAGATGTTTATAGTTTTGGGGTACTCCTTGTGGAAATAGTCAGTGGCAGATGCAATACTAATACACTACTACCCATTGAGGAACAGTATCTGCTTGAAAGGACATGGAATCTCTATGAACGCAGGGAGCTGGTTGGTCTGGTAGACACAGCATTGAACGGGGATTTTGATGCTGAGGAGGCCTGTAGATTCTTAAAGATTGGTCTTCTCTGCACACAAGACACTCCGAAGCTCAGACCATCCATGCCAACTGTGGTGAAGATGCTAAAAGGTCAGAAGGAAATCGACGATACTAAGATAACAAAGCCAGGCTTGATATCTGATTTCATGGATCTCAAAATACGAAGCCAACCGAATAGTAAGAAGCCTAGCGAAAAGACCACTGCTTCGTCCTACAATGAGTCCTCCGGTTCAGACAACCCGGACAATTCAAACCTGTCATCAGAAACCTCAGCTGCTGCTATTTCCACTTTCATCACAAACCTGTCCTTTGAAACCACACCTCCGGGTACTACAACCTTCGACTTCAAAACCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

407

Amino Acids

45.17

Weight (kDa)

5.82

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 48 - 313 5.5e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 48 - 249 1.3e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 646
AccI GTMKAC 2 cut(s) 354, 828
AclWI GGATC 1 cut(s) 1023
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 2 cut(s) 345, 561
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 4 cut(s) 107, 492, 708, 1195
AfiI CCNNNNNNNGG 1 cut(s) 484
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 7 cut(s) 59, 118, 782, 841, 1116, 1178, 1213
AjnI CCWGG 1 cut(s) 991
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 5 cut(s) 233, 313, 814, 916, 1139
AluI AGCT 5 cut(s) 233, 313, 814, 916, 1139
AlwI GGATC 1 cut(s) 1023
AlwNI CAGNNNCTG 2 cut(s) 775, 1142
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 3 cut(s) 574, 594, 864
ApeKI GCWGC 3 cut(s) 212, 1139, 1142
ApoI RAATTY 2 cut(s) 345, 561
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AspS9I GGNCC 1 cut(s) 337
AsuC2I CCSGG 3 cut(s) 593, 1106, 1191
AsuHPI GGTGA 2 cut(s) 262, 952
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 646
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 881
BbvCI CCTCAGC 2 cut(s) 858, 1135
BbvI GCAGC 3 cut(s) 199, 1126, 1129
BccI CCATC 2 cut(s) 194, 931
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 1 cut(s) 993
BcnI CCSGG 3 cut(s) 593, 1106, 1191
BfaI CTAG 2 cut(s) 305, 1053
BfmI CTRYAG 1 cut(s) 868
BisI GCNGC 3 cut(s) 213, 1140, 1143
BlsI GCNGC 3 cut(s) 214, 1141, 1144
Bme1390I CCNGG 4 cut(s) 593, 993, 1106, 1191
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 338, 648
BmrFI CCNGG 4 cut(s) 593, 993, 1106, 1191
BmsI GCATC 3 cut(s) 725, 844, 936
BpiI GAAGAC 1 cut(s) 881
Bpu10I CCTNAGC 2 cut(s) 858, 1135
BpuMI CCSGG 3 cut(s) 593, 1106, 1191
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 1091
BsaXI ACNNNNNCTCC 2 cut(s) 1171, 1201
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 993
BseGI GGATG 2 cut(s) 493, 923
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 4 cut(s) 258, 849, 931, 1149
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 2 cut(s) 694, 875
BseXI GCAGC 3 cut(s) 199, 1126, 1129
BsgI GTGCAG 1 cut(s) 880
BshFI GGCC 3 cut(s) 576, 596, 866
BshNI GGYRCC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 4 cut(s) 593, 1092, 1106, 1190
BslFI GGGAC 2 cut(s) 201, 350
BslI CCNNNNNNNGG 1 cut(s) 484
BsmFI GGGAC 2 cut(s) 201, 350
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 3 cut(s) 576, 596, 866
BsoBI CYCGRG 1 cut(s) 365
Bsp143I GATC 2 cut(s) 279, 1015
BspANI GGCC 3 cut(s) 576, 596, 866
BspCNI CTCAG 4 cut(s) 259, 850, 930, 1148
BspHI TCATGA 2 cut(s) 85, 481
BspLI GGNNCC 2 cut(s) 338, 648
BspPI GGATC 1 cut(s) 1023
BspT107I GGYRCC 1 cut(s) 646
BsrI ACTGG 1 cut(s) 418
BssMI GATC 2 cut(s) 279, 1015
BssSI CACGAG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 2 cut(s) 771, 937
Bst6I CTCTTC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 471, 526
BstDEI CTNAG 5 cut(s) 267, 858, 917, 978, 1135
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 493, 923
BstKTI GATC 2 cut(s) 282, 1018
BstMBI GATC 2 cut(s) 279, 1015
BstMWI GCNNNNNNNGC 2 cut(s) 436, 863
BstNI CCWGG 1 cut(s) 993
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 4 cut(s) 591, 991, 1104, 1189
BstSFI CTRYAG 1 cut(s) 868
BstV1I GCAGC 3 cut(s) 199, 1126, 1129
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 1015
BstYI RGATCY 1 cut(s) 1015
BsuRI GGCC 3 cut(s) 576, 596, 866
BtsCI GGATG 2 cut(s) 493, 923
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 2 cut(s) 733, 1065
Cac8I GCNNGC 2 cut(s) 471, 526
CaiI CAGNNNCTG 2 cut(s) 775, 1142
CciI TCATGA 2 cut(s) 85, 481
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 106, 491, 707, 1194
CviAII CATG 8 cut(s) 86, 296, 462, 482, 608, 789, 928, 1012
CviQI GTAC 4 cut(s) 106, 491, 707, 1194
DdeI CTNAG 5 cut(s) 267, 858, 917, 978, 1135
DpnI GATC 2 cut(s) 281, 1017
DpnII GATC 2 cut(s) 279, 1015
DraIII CACNNNGTG 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 866
Eco32I GATATC 2 cut(s) 517, 1002
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 365
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 991
EcoRV GATATC 2 cut(s) 517, 1002
FaeI CATG 8 cut(s) 89, 299, 465, 485, 611, 792, 931, 1015
FalI AAGNNNNNCTT 2 cut(s) 980, 1012
FaqI GGGAC 2 cut(s) 201, 350
FatI CATG 8 cut(s) 85, 295, 461, 481, 607, 788, 927, 1011
FauNDI CATATG 1 cut(s) 1220
FblI GTMKAC 2 cut(s) 354, 828
Fnu4HI GCNGC 3 cut(s) 213, 1140, 1143
FokI GGATG 2 cut(s) 500, 910
Fsp4HI GCNGC 3 cut(s) 213, 1140, 1143
FspBI CTAG 2 cut(s) 305, 1053
GluI GCNGC 3 cut(s) 213, 1140, 1143
HaeIII GGCC 3 cut(s) 576, 596, 866
HapII CCGG 4 cut(s) 593, 1092, 1106, 1190
Hin1II CATG 8 cut(s) 89, 299, 465, 485, 611, 792, 931, 1015
HinfI GANTC 6 cut(s) 35, 236, 604, 793, 873, 1085
HpaII CCGG 4 cut(s) 593, 1092, 1106, 1190
HphI GGTGA 2 cut(s) 262, 952
Hpy166II GTNNAC 3 cut(s) 355, 497, 829
Hpy188I TCNGA 8 cut(s) 455, 568, 912, 920, 960, 1006, 1099, 1129
Hpy188III TCNNGA 5 cut(s) 42, 86, 240, 367, 482
Hpy8I GTNNAC 3 cut(s) 355, 497, 829
Hpy99I CGWCG 1 cut(s) 974
HpyAV CCTTC 7 cut(s) 25, 155, 247, 326, 488, 955, 1213
HpyCH4III ACNGT 2 cut(s) 771, 937
HpyCH4IV ACGT 3 cut(s) 104, 493, 600
HpyCH4V TGCA 5 cut(s) 383, 461, 581, 738, 897
HpyF10VI GCNNNNNNNGC 2 cut(s) 436, 863
HpyF3I CTNAG 5 cut(s) 267, 858, 917, 978, 1135
HpySE526I ACGT 3 cut(s) 104, 493, 600
Hsp92II CATG 8 cut(s) 89, 299, 465, 485, 611, 792, 931, 1015
Kzo9I GATC 2 cut(s) 279, 1015
LmnI GCTCC 1 cut(s) 811
Lsp1109I GCAGC 3 cut(s) 199, 1126, 1129
LweI GCATC 3 cut(s) 725, 844, 936
MaeI CTAG 2 cut(s) 305, 1053
MaeII ACGT 3 cut(s) 104, 493, 600
MaeIII GTNAC 1 cut(s) 601
MalI GATC 2 cut(s) 281, 1017
MboI GATC 2 cut(s) 279, 1015
MboII GAAGA 4 cut(s) 143, 383, 881, 955
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 1 cut(s) 1015
MluCI AATT 6 cut(s) 345, 424, 456, 561, 671, 1111
MlyI GAGTC 3 cut(s) 29, 598, 1094
MseI TTAA 5 cut(s) 93, 195, 309, 423, 878
MslI CAYNNNNRTG 2 cut(s) 486, 620
MspA1I CMGCKG 2 cut(s) 233, 1139
MspI CCGG 4 cut(s) 593, 1092, 1106, 1190
MspR9I CCNGG 4 cut(s) 593, 993, 1106, 1191
MunI CAATTG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 993
MwoI GCNNNNNNNGC 2 cut(s) 436, 863
NciI CCSGG 3 cut(s) 593, 1106, 1191
NdeI CATATG 1 cut(s) 1220
NdeII GATC 2 cut(s) 279, 1015
NlaIII CATG 8 cut(s) 89, 299, 465, 485, 611, 792, 931, 1015
NlaIV GGNNCC 2 cut(s) 338, 648
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 365
PagI TCATGA 2 cut(s) 85, 481
PceI AGGCCT 1 cut(s) 866
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 236, 793, 873
PkrI GCNGC 3 cut(s) 214, 1141, 1144
PleI GAGTC 3 cut(s) 29, 598, 1093
PpsI GAGTC 3 cut(s) 29, 598, 1093
Ppu21I YACGTR 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 991
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 2 cut(s) 338, 648
PspPI GGNCC 1 cut(s) 337
PstNI CAGNNNCTG 2 cut(s) 775, 1142
PsuI RGATCY 1 cut(s) 1015
PvuII CAGCTG 2 cut(s) 233, 1139
RsaI GTAC 4 cut(s) 107, 492, 708, 1195
RsaNI GTAC 4 cut(s) 106, 491, 707, 1194
RseI CAYNNNNRTG 2 cut(s) 486, 620
SaqAI TTAA 5 cut(s) 93, 195, 309, 423, 878
SatI GCNGC 3 cut(s) 213, 1140, 1143
Sau3AI GATC 2 cut(s) 279, 1015
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 3 cut(s) 29, 598, 1094
ScrFI CCNGG 4 cut(s) 593, 993, 1106, 1191
SfaNI GCATC 3 cut(s) 725, 844, 936
SfcI CTRYAG 1 cut(s) 868
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 337
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 486, 620
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 6 cut(s) 345, 424, 456, 561, 671, 1111
SseBI AGGCCT 1 cut(s) 866
SspI AATATT 1 cut(s) 532
SspMI CTAG 2 cut(s) 305, 1053
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 4 cut(s) 591, 991, 1104, 1189
TaaI ACNGT 2 cut(s) 771, 937
TaiI ACGT 3 cut(s) 107, 496, 603
TaqI TCGA 3 cut(s) 366, 969, 1206
TasI AATT 6 cut(s) 345, 424, 456, 561, 671, 1111
TfiI GAWTC 3 cut(s) 236, 793, 873
Tru1I TTAA 5 cut(s) 93, 195, 309, 423, 878
Tru9I TTAA 5 cut(s) 93, 195, 309, 423, 878
TscAI CASTG 2 cut(s) 733, 1072
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 3 cut(s) 212, 1139, 1142
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 7 cut(s) 7, 74, 312, 470, 816, 1000, 1147
TspRI CASTG 2 cut(s) 733, 1072
VpaK11BI GGWCC 1 cut(s) 337
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 2 cut(s) 345, 561
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XhoI CTCGAG 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 354, 828
XspI CTAG 2 cut(s) 305, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.